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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C13.144.v1...'
  2. Clone 'cien131768'
  3. Clone 'cien84376'
  4. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr7.g63408.01.t

Possible name(s)

TBX19; TBX6; TBXT

Location

chr7 [1,954,605 / 1,956,796]

Sequences

Amino acid sequence

Length: 154

>Boschl.CG.Botznik2013.chr7.g63408.01.p
MIVTKSGRRMFPVLKVTATGLEPTSMYSFHLYFASSDLHRWKYVNGDWIPGGKPEPHTPP
CVYVHPDSPNFGAHWMKQPVSFNKVKLTNKGNGGSQQIMLNSLHKYEPRIQVVKVGVDSS
SQRTIATFSFPETKFIAVTAYQNEEVCINFLYVI

Nucleotide sequence

Length: 465

>Boschl.CG.Botznik2013.chr7.g63408.01.t
AATGATAGTGACAAAAAGCGGACGACGTATGTTCCCTGTACTGAAAGTTACCGCCACCGG
ACTGGAACCTACTTCCATGTACTCGTTCCATTTATATTTTGCCTCGTCGGACCTGCACAG
ATGGAAGTATGTCAACGGAGACTGGATTCCTGGTGGCAAGCCAGAACCGCATACTCCACC
TTGCGTATACGTGCATCCGGATTCGCCGAATTTCGGCGCACATTGGATGAAGCAACCGGT
CAGCTTCAATAAAGTGAAACTGACTAACAAAGGAAATGGAGGAAGTCAGCAAATCATGCT
GAATTCACTGCACAAATATGAGCCACGTATTCAAGTGGTCAAAGTTGGAGTCGATTCCTC
GTCACAGAGAACCATCGCCACGTTCTCGTTTCCTGAGACGAAATTTATCGCTGTAACAGC
GTATCAAAATGAAGAGGTTTGCATCAACTTCCTATACGTGATATG

InterProScan

Gene3D
T-box_sf (IPR036960) - T[1-149] 2.7E-59
SMART
TF_T-box (IPR001699) - T[1-151] 5.5E-59
ProSiteProfiles
TF_T-box (IPR001699) - T[1-146] 56.997
SUPERFAMILY
p53-like_TF_DNA-bd (IPR008967) - T[1-146] 1.16E-56
Pfam
TF_T-box (IPR001699) - T[1-146] 1.9E-52
PANTHER
TF_T-box (IPR001699) - T[1-146] 5.6E-90
PRINTS
TF_Brachyury (IPR002070) - T[43-63] 2.0E-14 - T[104-121] 2.0E-14
PRINTS
TF_T-box (IPR001699) - T[63-76] 2.6E-24 - T[80-89] 2.6E-24 - T[99-113] 2.6E-24 - T[133-146] 2.6E-24
ProSitePatterns
TF_T-box_CS (IPR018186) - T[64-82] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
BRAC_HUMAN 73.288 % 228 1.96E-74
TBX19_HUMAN 68.493 % 215 3.36E-69
TBX6_HUMAN 49.66 % 149 4.67E-44