Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr7.g58503.01.t

Possible name(s)

MKRN1; MKRN2; MKRN3

Gene model

Boschl.CG.Botznik2013.chr7.g58503

Location

chr7 [3,236,010 / 3,240,880]

Sequences

Amino acid sequence

Length: 244

>Boschl.CG.Botznik2013.chr7.g58503.01.p
MCELRILHPTDVSQQEKHKRECLASHEEDMKASFSVAESAKVTCGICMEVVWEKKEKRDR
KFGILENCNHSYCLECIRKWRSAKSFQNTVVRACPECRVTSSFVTPSEHWVTEPEEKKKL
IAGYKSHLSRKPCKHFDQGRGECPFGANCFYLHQYPDGTEQDRSKIPRKVRSADGGWESM
DTSTLWQFIEERDGELLDFDDADMDLFDLVYLLGANDYFDEDNDSLDWYGGSEISDDDSL
LFFG

Nucleotide sequence

Length: 735

>Boschl.CG.Botznik2013.chr7.g58503.01.t
TGTGCGAGCTGAGGATTCTCCATCCCACTGACGTGTCACAGCAAGAGAAACACAAAAGGG
AATGCTTGGCTTCTCACGAGGAAGATATGAAAGCTTCGTTCAGTGTTGCGGAAAGTGCCA
AAGTCACTTGCGGAATCTGTATGGAAGTGGTCTGGGAGAAGAAGGAGAAACGGGACAGAA
AATTTGGGATATTAGAAAATTGCAATCACTCGTATTGTCTCGAATGCATACGGAAGTGGA
GGAGTGCCAAGTCGTTTCAAAACACTGTCGTAAGGGCCTGTCCAGAATGTAGAGTGACGA
GTTCTTTTGTAACTCCGAGCGAGCATTGGGTGACGGAACCGGAAGAGAAGAAGAAATTAA
TTGCCGGCTACAAGTCTCATTTGTCGAGAAAACCCTGCAAACATTTTGACCAAGGCCGTG
GCGAGTGTCCGTTCGGGGCGAACTGCTTCTATCTGCATCAGTATCCTGACGGGACGGAGC
AGGACCGGTCGAAAATACCGAGGAAAGTCCGTAGCGCTGACGGAGGCTGGGAAGGTATGG
ACACGTCAACGCTGTGGCAATTCATCGAAGAGAGAGACGGAGAGCTTCTCGACTTTGACG
ACGCCGACATGGATTTGTTTGACTTGGTTTACCTACTAGGTGCAAATGACTATTTTGATG
AGGACAACGATTCGTTGGACTGGTACGGCGGTTCGGAGATTAGCGACGACGACAGTCTGC
TTTTCTTCGGATAGA

InterProScan

Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[30-115] 1.3E-10
SMART	Znf_RING (IPR001841) - T[44-97] 3.7E-7
Pfam	Znf_C3HC4_RING-type (IPR018957) - T[44-97] 5.8E-7
ProSiteProfiles	Znf_RING (IPR001841) - T[44-98] 12.047
ProSitePatterns	Znf_RING_CS (IPR017907) - T[68-77] .
ProSiteProfiles	Znf_CCCH (IPR000571) - T[128-156] 14.483
SMART	Znf_CCCH (IPR000571) - T[129-155] 0.0034

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
MKRN1_HUMAN	50 %	232	4.93E-74
MKRN4_HUMAN	48.357 %	224	9.26E-71
MKRN2_HUMAN	44.24 %	207	4.61E-65