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TRANSCRIPT CARD

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  1. Clone 'cima007k10' > 
  2. Region 'REG00000796' > 
  3. Transcript 'Cisavi.CG.ENS81.R401...' > 
  4. Region 'REG00000779' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr7.g53212.02.t

Possible name(s)

TBX2; TBX3; TBX4

Gene model

Boschl.CG.Botznik2013.chr7.g53212

Location

chr7 [6,112,985 / 6,117,216]

Sequences

Amino acid sequence

Length: 1,205

>Boschl.CG.Botznik2013.chr7.g53212.02.p
MFPSXKVKVTXLNKNAKYIMLMDIVAADDCRYKFHNSRWMVAGKADPELPKRMYIHPDSP
ATGEQWMNRPGVSFHKLKLTNNIADPHGHTILNSMHKYQPRFHVVRCGDLSKLPYCHFRT
YVFKEMQFIAVTAYQNEKITQLKIDHNPFAKGFRDSGSGKREKRRQHFHLDRPMMGKRLS
DDSSKIASDGLSDDCQVPRSDTRRFSASPESRHTHSQSQDARTNTRKISGEQKQPLPLPG
AVQTQEVSGKSGFLSDCSSNSPERRRTPEVTSSSRDGGQILENKKTPLIPTKFDERGPLR
VSPRSPTLSPPSSVTSSTITSPIPIHANSFASLGSYPNPLMPHFAAALQSHPYLHSNHLS
ALSAAMSAHGNVFSGSGSINPALLHAAVAGANDFGGGPSSSRASSFLPPHSPAALSSLLT
SVGPYANFFPYSYNPYLPAGGRPFVSAAAKDADPSGRLGQTRALAESLYRHSAKFGKGES
QSGHNLSLHTKAPTLTTGHSRFSPYHIPKGSHLDYAGHRSSVHIDSPSSKYGDSRHNVSS
ASSVSNGSPTRSIMRVDSSDGDSEMKEEPVSPKSMSRRSAVHEIRNMERLVSGLERRNKI
SSEMFPSXKVKVTXLNKNAKYIMLMDIVAADDCRYKFHNSRWMVAGKADPELPKRMYIHP
DSPATGEQWMNRPGVSFHKLKLTNNIADPHGHTILNSMHKYQPRFHVVRCGDLSKLPYCH
FRTYVFKEMQFIAVTAYQNEKITQLKIDHNPFAKGFRDSGSGKREKRQHFHLDRPMMGKR
LSDDSSKIASDGLSDDCQVPRSDTRRFSASPESRHTHSQSQDARTNTRKISGEQKQPLPL
PGAVQTQEVSGKSGFLSDCSSNSPERRRTPEVTSSSRDGGQILENKKTPLIPTKFDERGP
LRVSPRSPTLSPPSSVTSSTITSPIPIHANSFASLGSYPNPLMPHFAAALQSHPYLHSNH
LSALSAAMSAHGNVFSGSGSINPALLHAAVAGANDFGGGPSSSRASSFLPPHSPAALSSL
LTSVGPYANFFPYSYNPYLPAGGRPFVSAAAKDADPSGRLGQTRALAESLYRHSAKFGKG
ESQSGHNLSLHTKAPTLTTGHSRFSPYHIPKGSHLDYAGHRSSVHIDSPSSKYGDSRHNV
SSASSVSNGSPTRSIMRVDSSDGDSEMKEEPVSPKSMSRRSAVHEIRNMERLVSGLERRN
KISSE

Nucleotide sequence

Length: 1,809

>Boschl.CG.Botznik2013.chr7.g53212.02.t
GATGTTCCCGTCATTNAAAGTGAAGGTAACCGGNTTGAACAAGAACGCCAAGTACATCAT
GCTGATGGACATTGTCGCCGCCGACGACTGCCGGTATAAATTCCACAATTCGAGATGGAT
GGTGGCGGGAAAAGCCGACCCGGAGCTACCGAAGAGAATGTACATCCACCCGGATTCTCC
GGCAACCGGGGAACAGTGGATGAACAGACCCGGCGTTTCGTTCCACAAGCTGAAGCTCAC
CAACAACATCGCGGATCCGCACGGTCAGACAATTCTCAACTCCATGCACAAATATCAACC
TCGCTTCCACGTCGTGCGATGCGGCGACCTTTCGAAGCTGCCGTATTGCCATTTTCGGAC
ATACGTATTCAAGGAAATGCAGTTCATCGCCGTGACAGCCTACCAAAATGAAAAGATCAC
GCAATTGAAAATCGACCACAATCCGTTCGCGAAAGGCTTTAGGGACTCGGGAAGTGGCAA
ACGAGAAAAAAGACAGCATTTTCATTTGGATCGACCAATGATGGGAAAAAGGCTTTCGGA
TGATTCTAGCAAGATAGCTAGCGATGGGTTGAGCGATGACTGTCAGGTGCCAAGATCCGA
TACGAGACGATTTTCCGCTTCTCCAGAATCGCGACACACGCATTCTCAATCCCAAGACGC
CAGAACAAACACGAGAAAGATTAGCGGCGAGCAAAAGCAACCCCTACCGTTACCGGGCGC
CGTTCAAACTCAGGAAGTATCTGGAAAGTCCGGATTCCTATCAGACTGTTCCTCGAATTC
CCCGGAACGCCGGCGTACGCCGGAAGTGACATCATCTAGCCGGGACGGGGGTCAAATCCT
CGAAAACAAGAAGACCCCGCTGATCCCCACGAAATTCGACGAGAGGGGGCCGTTAAGAGT
GTCGCCACGCAGCCCTACGTTGTCACCGCCCTCATCCGTTACGTCATCAACGATCACGTC
ACCTATACCGATCCATGCCAATAGCTTCGCCAGTCTAGGAAGCTACCCCAATCCTCTCAT
GCCACATTTCGCCGCGGCACTGCAGTCTCACCCGTACCTCCATTCAAACCACCTGTCCGC
TTTGTCAGCAGCTATGTCAGCCCACGGGAACGTGTTTTCCGGTTCCGGGTCTATTAACCC
GGCGCTACTGCATGCGGCCGTGGCCGGAGCCAATGATTTCGGCGGCGGTCCCTCGTCGTC
CAGAGCCTCGTCTTTCCTGCCACCGCACAGTCCAGCGGCGCTTTCATCACTGTTAACGTC
AGTGGGGCCATACGCGAACTTCTTTCCGTATTCTTATAACCCATATCTACCTGCCGGAGG
CAGACCTTTCGTATCGGCCGCTGCTAAAGACGCAGACCCGTCGGGTAGATTAGGACAGAC
AAGAGCTCTGGCCGAAAGCCTCTACAGACATTCAGCGAAATTCGGTAAAGGCGAATCGCA
GAGCGGTCACAATTTATCGCTGCATACTAAGGCTCCGACGCTGACTACCGGCCACTCTCG
CTTTTCACCATATCACATTCCGAAAGGAAGTCACTTGGATTACGCCGGCCACCGCTCATC
CGTTCATATCGATTCCCCCAGCTCAAAATACGGAGACAGTAGGCATAACGTGTCCAGCGC
GTCGTCGGTTAGTAACGGTAGCCCCACGCGTAGTATCATGCGCGTCGATTCCAGCGATGG
CGACTCGGAGATGAAGGAAGAGCCGGTGTCTCCGAAATCGATGAGCCGCAGAAGCGCGGT
CCACGAGATTCGTAATATGGAACGTTTGGTGTCCGGGTTGGAGCGGAGGAACAAAATTTC
TAGCGAATA

InterProScan

CDD
TF_T-box (IPR001699) - T[1-157] 1.2498E-95 - T[604-760] 1.2498E-95
ProSiteProfiles
TF_T-box (IPR001699) - T[1-155] 60.442 - T[599-758] 59.717
PANTHER
TF_T-box (IPR001699) - T[1-600] 7.6E-262 - T[602-1202] 7.6E-262
SMART
TF_T-box (IPR001699) - T[1-160] 7.8E-83 - T[586-763] 2.4E-89
SUPERFAMILY
p53-like_TF_DNA-bd (IPR008967) - T[1-155] 2.86E-60 - T[599-758] 2.36E-61
Pfam
TF_T-box (IPR001699) - T[1-155] 1.1E-64 - T[602-758] 3.0E-65
Gene3D
T-box_sf (IPR036960) - T[1-161] 1.1E-76 - T[582-764] 1.3E-77
PRINTS
TF_Brachyury (IPR002070) - T[34-54] 2.2E-5 - T[96-113] 2.2E-5
PRINTS
TF_T-box (IPR001699) - T[592-616] 2.7E-24 - T[657-670] 2.7E-24 - T[694-708] 2.7E-24 - T[729-742] 2.7E-24 - T[750-758] 2.7E-24

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TBX2_HUMAN 72.821 % 304 2.53E-89
TBX3_HUMAN 60.345 % 286 1.41E-82
TBX4_HUMAN 54.974 % 211 1.9E-58