- Transcript 'KH2012:KH.C1.404.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S45...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr7.g13976.01.t
Possible name(s)
AMY1A; AMY1B; AMY1C
Gene model
Location
chr7 [12,312,662 / 12,316,505]
Amino acid sequence
Length: 354
>Boschl.CG.Botznik2013.chr7.g13976.01.p
MLAWPYGVPRVMSSYYFSNSEEGPPANQRYVNEDGSCGNGWVCEHRWRQIKNMFSFSAAV
VGTGVDNWWTNDNNQIAFSRGSKGFFAANNAGYGMSEYLYTGLPDGSYCNVILGDFYDGK
CAGDCVTVSGGTAQVNVDGSGENRVFAIHVDAMTTQCNVGGGIDGGGNGGGNTGGGGYIE
TTCTDCTCPDTEKVDCGELASTEATCTASGCLWCPLTDGSNAPWCFHKASEESSTSSPGN
GGSNGGGDESCVDCNCPSHKKTDCGFLGIDANGCNIQGCLWCESSVSGDPWCFYPDSDGD
GTGDSGTRQCYVDDADKTDCGYMGVDQQQCELDGCCWAESNTNGVPWCYHQVQG
Nucleotide sequence
Length: 1,065
>Boschl.CG.Botznik2013.chr7.g13976.01.t
TGTTGGCGTGGCCTTACGGAGTGCCGAGAGTCATGTCGAGCTACTACTTCAGGAACTCAG
AAGAGGGACCACCAGCCAACCAACGTTACGTGAATGAGGATGGTTCATGCGGGAACGGTT
GGGTTTGCGAGCACAGGTGGAGGCAGATCAAAAACATGTTCTCATTCTCAGCGGCCGTTG
TTGGCACCGGAGTCGACAATTGGTGGACGAACGACAACAATCAAATCGCGTTTTCTCGTG
GGTCTAAAGGATTTTTCGCCGCCAACAACGCCGGATACGGCATGAGTGAATACTTGTATA
CCGGACTACCGGACGGATCATACTGCAACGTAATCCTTGGAGATTTCTACGACGGCAAAT
GCGCGGGCGACTGCGTCACCGTTTCTGGAGGAACCGCGCAGGTCAATGTCGACGGCAGCG
GAGAAAACCGAGTTTTTGCGATCCACGTAGACGCTATGACGACTCAGTGCAACGTAGGCG
GCGGAATAGATGGTGGAGGTAACGGTGGTGGCAACACAGGCGGTGGTGGTTATATCGAGA
CCACCTGCACGGATTGCACTTGCCCGGATACCGAGAAGGTTGACTGCGGCGAGTTGGCGT
CCACGGAAGCCACCTGCACAGCCTCTGGATGTCTCTGGTGTCCTCTCACGGACGGCAGCA
ATGCCCCATGGTGCTTCCACAAGGCTTCCGAGGAGTCTTCGACATCAAGCCCTGGAAATG
GAGGATCTAATGGCGGCGGAGGCGAGTCTTGCGTGGACTGCAACTGCCCCTCCCACAAGA
AGACCGACTGCGGATTCCTCGGAATCGACGCCAACGGTTGCAATATCCAAGGGTGCCTTT
GGTGCGAGAGCTCTGTGAGCGGGGATCCGTGGTGCTTCTATCCGGATAGTGACGGAGACG
GGACCGGAGACAGTGGAACGAGACAATGCTACGTGGACGATGCAGACAAGACCGACTGTG
GCTACATGGGAGTCGACCAACAACAATGTGAGTTGGATGGCTGTTGTTGGGCAGAGTCGA
ACACAAACGGAGTGCCCTGGTGCTATCATCAAGTACAAGGATGAA
| SUPERFAMILY |
Glycoside_hydrolase_SF (IPR017853) - T[1-85] 6.6E-10 |
| Gene3D |
Glyco_hydro_b (IPR013780) - T[64-159] 9.8E-30 |
| SMART |
A-amylase_C (IPR031319) - T[66-153] 4.2E-31 |
| Pfam |
A-amylase/branching_C (IPR006048) - T[69-137] 7.1E-10 |
| SMART |
P_trefoil_dom (IPR000519) - T[184-232] 2.6E-6 - T[252-299] 0.0034 - T[308-354] 1.1E-5 |
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[184-229] 13.839 - T[252-296] 13.252 - T[308-352] 15.432 |
| CDD |
P_trefoil_dom (IPR000519) - T[185-228] 1.44667E-4 - T[253-296] 2.7443E-4 - T[309-350] 3.19143E-8 |
| Pfam |
P_trefoil_dom (IPR000519) - T[186-227] 6.1E-8 - T[254-295] 3.3E-7 - T[310-350] 1.6E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| AMYP_HUMAN | 45.509 % | 132 | 9.88E-35 |
| AMY1_HUMAN | 45.509 % | 135 | 9.33E-36 |
| AMY2B_HUMAN | 44.311 % | 133 | 8.09E-35 |