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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S5.g...' > 
  2. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr6.g59080.01.t

Possible name(s)

NUP50

Gene model

Boschl.CG.Botznik2013.chr6.g59080

Location

chr6 [1,806,689 / 1,809,597]

Sequences

Amino acid sequence

Length: 449

>Boschl.CG.Botznik2013.chr6.g59080.01.p
MEKRVADKYITDQNWDKEEDSDENAGTGEFKRANVDALKNRVIRKARRRMPPTGENKSGM
STFSGFAGLKPNVGFDNNAASNSFKGFTMNSESTTFNISVTKALEANSNSKNAGADGSIR
TEDTALAKSSEAEMEISQNATKYNNHLSSLNKSVSNWIKSHVEKNPLCDLSPIFNDYKKY
LAEIDDKYGHSDAEGSQASGKTTSDSQESASPDSSQTLSQRSDSENRKFTLSGFGSQEQS
GDKKSESSVPPKEEPKVQAITPSFAGFQTNPGTSGSPFAGFGSGGLSKPAGFSGFTFSSS
MVANKSQDAPGQQSATGDSEEYVPPKPESNVVVEDDAFYSIRCKLYYKKEESFADRGIGQ
LYLKPSGSKTQILVRADTAISQILLNILLTSSMPVQRQGKNYIMIMCIPNPPINEKQKDE
VVAMLIRVKTSENADELFGILESKKKEES

Nucleotide sequence

Length: 1,350

>Boschl.CG.Botznik2013.chr6.g59080.01.t
TGGAAAAGCGAGTAGCTGACAAGTATATAACCGATCAAAACTGGGATAAGGAGGAGGATT
CAGATGAAAATGCGGGAACCGGAGAATTCAAGAGAGCTAACGTAGATGCACTCAAAAACC
GCGTGATTCGTAAAGCGAGGAGACGTATGCCACCAACTGGGGAGAATAAGGGTGGAATGT
CCACATTTTCCGGTTTTGCGGGGCTGAAACCGAATGTTGGATTTGATAACAACGCAGCAT
CCAACTCATTTAAAGGCTTCACTATGAACAGTGAATCTACAACGTTCAATATTTCGGTAA
CTAAAGCGCTAGAAGCAAACTCCAATTCAAAGAATGCTGGTGCCGATGGCTCAATAAGGA
CTGAAGACACTGGTCTTGCAAAGTCGAGTGAGGCTGAAATGGAGATATCTCAGAATGCAA
CGAAATACAACAACCATTTAAGCTCATTAAACAAAAGTGTCAGTAACTGGATAAAGGGCC
ACGTGGAAAAGAACCCGCTATGTGACCTGAGCCCAATCTTCAACGATTACAAAAAGTATT
TAGCTGAAATCGATGACAAATATGGACACTCAGATGCTGAAGGCTCGCAAGCGTCTGGAA
AAACGACTTCTGATTCTCAAGAATCTGCATCCCCGGATTCGAGTCAGACTCTGTCGCAGC
GTAGCGATTCTGAGAATCGAAAATTTACTCTTTCCGGGTTTGGCTCGCAAGAACAATCAG
GGGACAAAAAGTCAGAATCTTCAGTCCCTCCTAAGGAGGAGCCCAAAGTGCAAGCTATCA
CGCCAAGCTTTGCAGGATTTCAAACCAATCCCGGGACTAGCGGTTCGCCTTTCGCCGGTT
TTGGATCGGGTGGTTTATCCAAACCTGCTGGATTTTCTGGGTTTACATTCAGTTCATCGA
TGGTCGCTAACAAAAGTCAAGATGCTCCCGGTCAGCAGGCCGCTACCGGTGACAGCGAAG
AGTATGTACCACCGAAACCGGAATCAAATGTGGTTGTCGAAGACGATGCCTTTTATTCCA
TAAGGTGTAAGCTTTACTACAAGAAAGAAGAGTCATTTGCCGACCGAGGAATCGGACAGT
TATATCTGAAGCCGTCCGGTTCGAAAACACAGATTTTAGTCCGGGCCGACACGGCCATCA
GCCAAATTCTACTCAACATTCTCTTGACGTCTTCCATGCCTGTTCAAAGACAGGGCAAGA
ATTATATCATGATCATGTGCATTCCGAATCCCCCCATCAATGAGAAGCAGAAAGATGAAG
TGGTTGCAATGCTTATCCGCGTGAAAACCAGCGAAAACGCTGACGAACTGTTTGGTATTC
TGGAAAGTAAGAAGAAAGAGGAAAGTTGAT

InterProScan

Pfam
NUP2/50/61 (IPR015007) - T[3-70] 2.9E-18
SMART
Ran_bind_dom (IPR000156) - T[320-445] 1.6E-5
Gene3D
PH-like_dom_sf (IPR011993) - T[332-447] 1.8E-26
Pfam
Ran_bind_dom (IPR000156) - T[335-446] 1.7E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NUP50_HUMAN 37.067 % 241 7.36E-75