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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C12.280.v1...' > 
  2. Transcript 'NCBI:KH.XM_018812876...' > 
  3. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr6.g29699.02.t

Possible name(s)

RNF13; RNF167; ZNRF4

Gene model

Boschl.CG.Botznik2013.chr6.g29699

Location

chr6 [9,866,367 / 9,867,852]

Sequences

Amino acid sequence

Length: 711

>Boschl.CG.Botznik2013.chr6.g29699.02.p
VLSDDETTASSDNAADSSDDEHTPLVQPSDAASPNASRYGTGYTLRNPFRNRGRFFRRRI
SESSDETTNTDTSDAEPSPDSLTARSASRYLSNAANTSSHYQSQELSPAHATDAEISGTT
STNSSQTNRYLVSAENMLNRRSRVSESSIAVLSDEESDDGSREPCSSVDYHTVNESIATA
RAPYNLESRMDIDGSSPEDIIVIAPGPRPNVPEYEEVMAIFTLAVFQLSILFCMLHNSDA
SLRAHGINNETAVFDDADAAFGPGVGYEGLVGVLYSGIPHDGCTPMIPPSRSSDSNTTSL
HFVLIERGKCDFALKVMHAQEAGYQAVIVCNINSDDLIHMSSGLPEIANKIDIPSVFVGQ
DTGTILNQSYLYSGTGVPYIELIESRFNPIDAYLIPFVVVIGVCFFSLLCFLLVRCCRDY
RHARRGRLSLQRLKKLPVKKFKKEDEYDVCAICLEDYVEEDLLRILPCQHAYHCNCVDPW
LTSSKRICPLCKRRVLSDDETTASSDNAADSSDDEHTPLVQPSDAASPNASRYGTGYTLR
NPFRNRGRFFRRRISESSDETTNTDTSDAEPSPDSLTARSASRYLSNAANTSSHYQSQEL
SPAHATDAEISGTTSTNSSQTNRYLVSAENMLNRRSRVSESSIAVLSDEESDDGSREPCS
SVDYHTVNESIATARAPYNLESRMDIDGSSPEDIIVIAPGPRPNVPEYEEV

Nucleotide sequence

Length: 1,485

>Boschl.CG.Botznik2013.chr6.g29699.02.t
AATGGCGATATTCACTTTGGCAGTGTTCCAACTGTCAATCCTGTTCTGTATGTTGCATAA
TTCTGATGCATCGTTACGTGCTCACGGTATTAACAACGAGACAGCGGTGTTCGATGACGC
TGATGCTGCCTTTGGTCCTGGCGTGGGATATGAAGGACTTGTCGGTGTGCTTTATTCAGG
GATACCTCACGATGGCTGCACTCCGATGATACCTCCGTCGAGAAGTTCCGACTCAAATAC
CACGTCTTTGCATTTTGTGCTTATCGAGCGCGGCAAATGCGATTTCGCGCTAAAAGTTAT
GCACGCTCAAGAAGCTGGATACCAAGCCGTCATTGTATGTAACATAAACTCAGATGATTT
AATACACATGAGTAGTGGACTGCCGGAAATCGCTAATAAGATTGATATCCCTTCGGTATT
TGTTGGACAAGACACTGGAACTATACTGAACCAGTCCTATCTGTACAGTGGAACTGGCGT
GCCTTACATTGAGCTGATAGAAAGTAGGTTCAATCCTATCGACGCTTATCTGATTCCGTT
TGTTGTGGTGATCGGTGTATGCTTTTTTTCGTTGTTATGCTTTTTGCTGGTAAGATGCTG
TCGAGACTATCGCCACGCACGACGTGGCAGACTGTCTTTGCAGAGATTGAAAAAACTGCC
AGTTAAAAAGTTCAAGAAAGAAGACGAATACGATGTGTGTGCTATATGTTTGGAGGATTA
TGTTGAGGAGGACCTGTTGAGAATTCTTCCCTGCCAGCATGCGTATCATTGCAATTGCGT
TGATCCCTGGCTGACCAGCAGTAAGCGCATTTGTCCTTTGTGTAAACGAAGGGTTTTGAG
TGATGATGAAACCACCGCGTCATCTGATAACGCCGCAGATTCGTCAGATGATGAACACAC
CCCTTTAGTGCAACCGTCTGACGCTGCATCCCCGAATGCTTCAAGATACGGCACCGGTTA
CACCCTGCGTAACCCATTTAGGAATAGAGGTCGGTTCTTCAGAAGGAGAATTTCCGAATC
CTCCGACGAAACCACCAATACCGACACATCTGACGCGGAACCTAGCCCGGATTCTTTGAC
TGCGCGTTCCGCGTCGAGGTATTTATCCAATGCTGCCAACACGTCCAGTCACTATCAATC
TCAGGAATTATCTCCAGCTCATGCTACGGATGCTGAAATATCTGGCACTACATCGACCAA
CTCCTCTCAAACGAACCGATATTTGGTGTCGGCAGAAAACATGTTAAATCGAAGGAGCAG
GGTGTCGGAATCCTCAATTGCAGTGTTGTCGGACGAGGAAAGCGATGACGGATCGCGTGA
GCCTTGCAGTTCTGTTGATTACCATACTGTAAACGAATCCATCGCCACGGCCCGGGCACC
CTACAACCTTGAATCACGGATGGACATTGACGGTAGTAGTCCGGAAGATATTATCGTGAT
TGCTCCAGGGCCGAGGCCGAATGTCCCAGAATATGAAGAAGTCTA

InterProScan

Pfam
PA_domain (IPR003137) - T[300-365] 6.7E-9
Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[427-501] 2.4E-18
Pfam
Znf_RING (IPR001841) - T[449-492] 2.8E-11
SMART
Znf_RING (IPR001841) - T[450-491] 8.8E-8
ProSiteProfiles
Znf_RING (IPR001841) - T[450-492] 12.784

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RNF13_HUMAN 40.997 % 260 3.11E-80
RN167_HUMAN 36.462 % 192 2.41E-55
RN128_HUMAN 29.391 % 92.4 9.22E-20