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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr6.g10228.01.t

Possible name(s)

MPDZ; PARD6A; PARD6G

Location

chr6 [8,684,384 / 8,690,549]

Sequences

Amino acid sequence

Length: 646

>Boschl.CG.Botznik2013.chr6.g10228.01.p
MRNDSSTSQVNKQIGSSPNLRKRGLLSPKNWGLSYYNPVDNTASRCGRIVPNRYFQFQVT
VIVVIKTKQHKNVMYCILSLNFESEDVTDESYQETLSRSSVSGDSRSESSATKDAVEAAS
DSGKNGKKRRYRRWHSDALAKFKDVRKLLSGSKKNISISDVLKTVTLNRNPSEILGICIK
EIERSVTPENRSNSDVRQSSVIVSRLISGGIAEKYGALQKGDEIVLVNNRDVSQLTIKEV
AALMDCHKHLVLTIRSGANHSNNNNISDSDQEDSIALVQRVCHNIFEENLNTPDSTSESV
ASNKTVRAHPIPSIYDNNIPALLDPILSKLNDKASGSEKQALETEYNEALHILLDAIKSF
ENPRKTPQSIMSAVAENTGSDLWGAASPENSQEHSPSGLTDTANRGTLSTTPHFPSSLDL
PDIPIFPVLQSEVSISEEIRVDGMSQKCKSYRRSHSFSTYPSESTHSNSKFTAHTPSLRE
NRHRFVGKLSRSGSRRTSDNKIDEIECRDGGKSASQSMQSDLDSQRPTTPGPHAAAQSER
CSGRGDGTTENISECENTDVNTGSVSSLAIENQIKRQNGSQQDLKTASRSPDENSANNLF
KIEHSSGITPNTTVETMTSTPGKIIYLLPDCVCNVVEIFTRRCFDR

Nucleotide sequence

Length: 1,941

>Boschl.CG.Botznik2013.chr6.g10228.01.t
TGCGCAATGACTCGAGTACAAGTCAAGTGAATAAACAAATCGGCTCAAGTCCAAATTTAA
GAAAACGAGGACTCCTGTCACCAAAAAATTGGGGCTTGAGTTATTACAACCCTGTGGACA
ACACAGGGTCACGCTGTGGTCGCATTGTTCCAAATCGATATTTTCAATTTCAAGTCACAG
TTATTGTCGTAATAAAAACAAAGCAGCATAAAAATGTAATGTATTGTATTTTGTCATTGG
ACTTTGAATCTGAAGACGTCACGGACGAAAGCTACCAGGAAACCTTGTCGAGAAGTTCGG
TATCTGGGGATAGCCGGTCCGAATCTTCCGCAACCAAAGACGCAGTGGAGGCTGCTTCCG
ATAGCGGCAAAAACGGCAAAAAGCGTCGTTACCGGAGATGGCATTCGGACGCGTTGGCCA
AGTTCAAAGACGTACGCAAACTACTTAGCGGTTCGAAAAAGAACATCAGCATATCCGACG
TGTTGAAGACGGTCACCCTCAACCGAAATCCGTCCGAAATTTTGGGAATATGCATCAAAG
AAATCGAGAGAAGCGTCACGCCCGAGAACAGAAGCAACAGCGACGTACGCCAATCGAGCG
TGATCGTGTCTCGCTTGATTTCCGGCGGAATCGCGGAAAAATACGGCGCCTTACAAAAAG
GCGACGAGATAGTCCTTGTTAATAATCGCGACGTCAGTCAGTTGACGATAAAAGAGGTCG
CGGCATTGATGGATTGCCATAAGCACCTGGTGCTGACGATACGCTCTGGTGCTAACCATT
CAAACAATAACAATATCTCTGACTCCGATCAGGAAGACAGTATCGCGCTAGTGCAAAGAG
TCTGCCACAATATATTCGAAGAAAATTTAAACACGCCCGATAGTACAAGCGAATCTGTCG
CATCCAACAAAACTGTCCGCGCGCACCCCATTCCGAGTATTTACGATAACAATATCCCGG
CTTTGCTAGACCCGATATTGTCAAAACTTAATGATAAGGCTAGTGGTAGTGAAAAGCAAG
CGCTCGAAACTGAATATAACGAAGCCTTGCATATTTTACTGGACGCGATCAAAAGCTTTG
AAAATCCACGTAAGACGCCGCAATCAATTATGTCTGCTGTCGCAGAAAACACTGGTTCTG
ATTTATGGGGTGCCGCGAGTCCAGAGAACTCGCAAGAGCACAGCCCGTCCGGTCTGACCG
ACACTGCCAATCGTGGCACCTTATCGACTACGCCGCACTTCCCAAGCTCGCTAGATTTGC
CGGATATTCCCATATTCCCAGTGCTTCAGTCTGAGGTTTCGATTAGCGAAGAAATTCGAG
TAGACGGAATGTCACAAAAGTGTAAGTCCTACCGGAGGTCCCACTCGTTTTCTACGTATC
CGAGCGAAAGCACACATTCGAATAGTAAGTTCACAGCCCATACGCCGTCGCTAAGAGAAA
ATAGGCATCGGTTTGTTGGGAAATTGTCAAGGTCCGGTTCGCGACGAACTTCCGACAATA
AAATCGATGAAATAGAATGCCGGGACGGCGGCAAATCTGCGTCGCAGTCTATGCAATCTG
ATCTCGATAGCCAACGCCCAACCACCCCCGGGCCTCATGCGGCAGCACAGTCAGAGCGCT
GCTCCGGAAGAGGTGATGGAACTACCGAGAATATTTCCGAATGTGAAAACACTGACGTAA
ACACCGGGAGCGTATCCAGCCTTGCGATCGAAAATCAGATCAAACGCCAAAATGGTTCGC
AACAAGATCTGAAGACCGCATCACGAAGCCCAGATGAAAACAGTGCAAATAACTTGTTTA
AAATCGAGCATTCCTCGGGCATCACTCCAAATACGACTGTGGAGACCATGACTTCGACCC
CAGGTAAGATTATATATTTATTACCCGATTGCGTGTGTAATGTTGTAGAAATTTTTACTC
GCAGATGTTTTGATCGTTAGC

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[158-257] 2.0E-14
ProSiteProfiles
PDZ (IPR001478) - T[164-244] 14.516
Pfam
PDZ (IPR001478) - T[165-254] 1.9E-9
SMART
PDZ (IPR001478) - T[173-258] 1.5E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value