- Transcript 'KH2012:KH.C12.210.v1...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g70327.01.t
Possible name(s)
TRIM2; TRIM3; TRIM56
Gene model
Location
chr5 [832,792 / 855,525]
Amino acid sequence
Length: 863
>Boschl.CG.Botznik2013.chr5.g70327.01.p
GSNFADCKITQVVITRCNMASGGVTIQETAIEDSVQEQQRIAVRKMASSQDLLTRINEEF
LTCQICFENYTCPKSLYCQHTFCKKCLQEYFTPNSTTLQCPTCRCMQQMPSGGIQDLKDN
FFISSMSDMLKTVKEIRSDDKNSSSLLCDTCDEDCRKPAMSRCLDCTDFLCSDCSLWHRR
TKLTRGHKIVSLKEFESGIHNEELKSRAKIYCTVHEGEAAKMYCKTCECPICHECIESGH
VGHSRCSLKEEVTTQSLQIEKXLVYAQSKMDVMQDMIKSLKDITELKRKSCQETESXIIQ
TSNKLVQMIDRRKQELIDEVRSMQQSEEKQIDADSDAVEMQINSLVSCSEFSKKVLEYGT
PKEILGLKNQMTHMLKQLLETHPVEQYHKDNRTEQTEYSFNGGNAEEIDDIFGKVGIVSK
PFPDSVEKXLRSLDTFCAKCPLPSKSISEDMPTKECVEINLIQQLGKQGDEDGEFESTPN
LAVNSVGEVITSDSDGCKIQIFDPIGRFKDAFKTEVKGKRLHPSGVAVLRNDDIVVCCED
QIYVWTYEGKLLQGIGKGFFTNCNSVVVDSKNRLIVSDIAQRAVLIFESDGTFVCKFDGS
ENGSTGKLVEPRYVTCDSKDNIIVSDAGNCSVKKFNKKGELLRMFGEEGSMEGQFQGPRG
ICTDEYDNIIVADCWSHRVDAFTPEGNFMRHLISGADGLHFPWSVAMTSSGRMMLSEDYS
WVVKIFSLPEYRGDTPPPDTDSDVTSPVTLIRGLELMHGQFDMANINKLSRWLKSSTNEA
ANDHIWRSLRIPSNPTYQDREKPIKPASRSKSFTNDSYSREHFSLQRPSRQTRASANDSS
APFQLSPDPFVLDDGINGISLDE
Nucleotide sequence
Length: 2,594
>Boschl.CG.Botznik2013.chr5.g70327.01.t
AGGTAGTAATTTTGCAGATTGCAAAATCACGCAAGTGGTAATTACAAGATGTAACATGGC
TTCTGGAGGTGTGACAATTCAGGAAACAGCGATCGAAGACTCAGTACAAGAACAGCAACG
GATCGCGGTGCGAAAAATGGCTAGTTCCCAGGATCTATTAACGAGGATAAATGAAGAGTT
TTTGACTTGCCAAATCTGCTTCGAAAACTATACCTGCCCGAAAAGTCTTTACTGTCAGCA
TACGTTTTGCAAGAAATGCCTGCAGGAGTACTTCACTCCCAACTCTACAACGTTGCAGTG
CCCAACGTGCAGATGCATGCAGCAGATGCCGAGCGGCGGGATCCAGGACTTGAAGGACAA
TTTTTTCATTTCGAGCATGTCAGACATGCTGAAGACGGTGAAAGAGATTAGGAGTGACGA
CAAAAACAGCTCGTCGTTGCTGTGCGACACATGCGACGAGGATTGCCGAAAGCCGGCTAT
GTCGCGATGCCTTGACTGTACCGACTTTTTGTGCAGCGATTGCTCCCTTTGGCACAGACG
CACGAAACTCACTCGCGGCCACAAAATCGTTTCCCTAAAGGAGTTTGAATCGGGGATTCA
CAACGAGGAATTGAAGAGTAGAGCGAAGATATACTGCACGGTACACGAAGGTGAAGCTGC
GAAAATGTACTGCAAAACCTGCGAATGTCCGATATGCCACGAATGCATAGAAAGCGGACA
CGTTGGTCACAGTAGGTGCTCGTTGAAAGAAGAGGTTACAACTCAAAGTCTTCAGGTCGA
AAAACTNCTGGTTTACGCTCAGAGCAAGATGGATGTGATGCAAGATATGATTAAAAGTCT
GAAAGATATCACCGAGCTGAAGCGAAAGTCTTGCCAAGAAACGGAGTCGANGATAATTCA
GACATCTAACAAATTGGTTCAAATGATCGATAGGGGGAAGCAAGAACTAATCGACGAGGT
TCGCTCCATGCAACAAAGCGAAGAAAAGCAAATTGATGCCGACTCGGACGCCGTGGAAAT
GCAAATAAATTCACTGGTGTCGTGTTCCGAGTTCTCAAAGAAGGTTTTAGAGTACGGGAC
CCCAAAGGAAATTCTGGGCTTGAAAAACCAAATGACACACATGCTGAAACAACTTCTCGA
GACACACCCGGTAGAACAATATCACAAAGACAACAGAACTGAACAAACGGAATACTCGTT
CAACGGCGGCAACGCGGAAGAAATCGACGACATTTTCGGAAAGGTCGGAATCGTATCGAA
GCCGTTTCCCGACAGCGTTGAAAAGGTNCTCCGGAGTCTCGACACCTTCTGCGCGAAATG
CCCGCTTCCTTCAAAGTCTATTAGCGAAGATATGCCCACGAAGGAATGCGTGGAGATTAA
CCTAATTCAACAGGTGGGTAAACAAGGTGACGAAGACGGCGAATTTGAATCGACCCCAAA
CCTGGCCGTCAACTCCGTGGGGGAAGTAATTACATCCGACTCGGACGGGTGCAAAATACA
GATATTCGATCCTATCGGAAGGTTCAAAGACGCTTTCAAGACTGAGGTTAAAGGAAAACG
CTTGCACCCGTCGGGTGTTGCCGTACTGCGCAATGACGACATTGTGGTCTGTTGCGAGGA
CCAGATCTACGTGTGGACTTACGAAGGGAAGTTGCTGCAAGGCATCGGGAAGGGATTTTT
CACGAACTGCAACAGCGTCGTTGTCGATTCGAAAAACAGGCTTATCGTCTCCGATATCGC
GCAGCGAGCCGTGCTTATTTTCGAGTCTGACGGTACTTTCGTATGTAAATTTGATGGGAG
CGAAAACGGGTCCACGGGGAAGTTGGTGGAGCCGCGCTACGTGACGTGCGATTCAAAAGA
TAACATCATCGTATCCGACGCTGGAAACTGTAGCGTCAAAAAGTTTAACAAAAAGGGAGA
GCTCCTTCGAATGTTCGGCGAAGAAGGCTCAATGGAAGGGCAGTTTCAAGGGCCGCGCGG
CATATGCACTGACGAGTATGACAATATCATTGTCGCCGATTGTTGGAGTCATAGAGTAGA
CGCTTTCACGCCGGAAGGCAACTTTATGCGCCACCTTATATCAGGCGCCGACGGTCTCCA
CTTTCCGTGGTCGGTAGCTATGACATCATCCGGGAGAATGATGCTTTCCGAAGATTACAG
TTGGGTGGTGAAGATATTCTCGTTGCCAGGATATCGAGGGGACACCCCGCCTCCGGATAC
CGACAGCGACGTTACGTCTCCGGTTACGCTGATTCGAGGGTTGGAACTGATGCACGGGCA
ATTCGACATGGCGAACATTAACAAACTTTCAAGATGGCTGAAGTCATCCACGAACGAGGC
CGCCAACGACCACATATGGAGAAGTTTACGGATCCCGAGCAATCCTACCTACCAGGATCG
CGAGAAACCCATCAAGCCCGCTTCCAGAAGCAAATCCTTCACCAACGACTCCTATTCCCG
CGAACACTTCTCCCTTCAACGGCCATCAAGGCAAACTCGCGCAAGCGCCAATGACTCGTC
CGCGCCATTTCAACTGTCTCCCGATCCCTTCGTGTTGGACGATGGTATTAACGGGATATC
TTTAGATGAATGAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[43-125] 5.5E-14 |
| Pfam |
Znf_RING (IPR001841) - T[62-104] 2.7E-7 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[63-104] 12.947 |
| SMART |
Znf_RING (IPR001841) - T[63-103] 1.6E-5 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[78-87] . |
| SMART |
Znf_B-box (IPR000315) - T[143-192] 3.7E-4 - T[207-248] 4.8E-5 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[143-192] 9.271 - T[207-248] 11.277 |
| Pfam |
Znf_B-box (IPR000315) - T[209-248] 1.6E-7 |
| CDD |
Znf_B-box (IPR000315) - T[210-248] 5.62306E-8 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[453-647] 1.7E-42 - T[648-730] 1.3E-17 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[462-505] 8.121 - T[517-537] 4.297 - T[549-590] 8.162 - T[599-638] 10.465 - T[645-685] 12.254 - T[686-729] 5.901 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRIM2_HUMAN | 22.222 % | 182 | 3.54E-48 |
| TRIM3_HUMAN | 25.339 % | 219 | 1.5E-60 |
| TRI56_HUMAN | 27.679 % | 154 | 1.52E-38 |