- Clone 'ciad003f07' >
- Clone 'AHC0AAA202YM20' >
- Transcript 'KH2012:KH.C2.36.v3.A...' >
- Region 'REG00000808' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g68654.02.t
Possible name(s)
FSHR; LHCGR; TSHR
Gene model
Location
chr5 [5,257,475 / 5,269,231]
Amino acid sequence
Length: 710
>Boschl.CG.Botznik2013.chr5.g68654.02.p
MSAASIARMGRVDRGELSRRRMQRDLHFQPESDIERPNAYTREIEGWKYCDGVIDCELSG
SDEDECEERMSAASIARMGRVDRGELSRRRMQRDLHFQPESDIERPNAYTREIEGWKYCD
GVIDCELSGSDEDECEERFHCNATKAGYVSIRKDQVCDGLIDCVDGKDENAGRCSGENSL
GXFLCPALGGNMVSIDASFQCDSIINCDDARDEKGCDDGRFYCENGEGPIFVSKNQVKDG
KADCSDWSDECPTVDGSNGQDAFSSRDEMIENPWLRVMVXIMGLLAIVGNLIVIVHESKK
LRFPGRKTTPAIRANRVLILNLACSDFLMGVYLVLLGSIAVQMKGEYCSKYIEWRTSSFC
VSLGILSVISSETSVMTMVILTGCRLYAIVRPFRSSAVPSMRHVMCLVCVAWATSLTLAL
LPLSSSLTHLFIAGVDFVFNPFVIGTEVSLNSAKNVFSVVASHYLWNASQDGDLNSFLDG
ASWKSLQNKGNAIGIEYFEPKTLWGYYSAASVCIPKFFISTSDPAWVFSFIVNLFNFLAF
TFVAVSYVIIYMSSRRNPATIRNRDVERKLMRKMQRKILRLVATDFCCWVPVCVMAFVKL
AGCHVSDTAYAFAAVILLPLNSALNPILYSDILDTVTQRTMGAVTTWISSLSRSGSASSN
NNKPDYIDLQLDALKTVPDCPPQKDVEDGKIMQDSPLAVNVEAAGKVGDD
Nucleotide sequence
Length: 1,926
>Boschl.CG.Botznik2013.chr5.g68654.02.t
TGTCCGCCGCCTCAATTGCACGGATGGGACGTGTGGACCGAGGAGAGCTTTCCAGAAGAC
GAATGCAACGCGACCTGCACTTTCAACCCGAGTCCGATATCGAGAGGCCGAACGCGTACA
CGCGAGAAATCGAAGGATGGAAGTATTGCGACGGCGTGATCGACTGCGAATTGTCCGGGA
GTGACGAAGATGAATGCGAAGAAAGGTTTCATTGCAACGCGACAAAAGCAGGATATGTCA
GCATCCGCAAGGATCAAGTCTGCGACGGCCTGATCGACTGCGTCGACGGCAAGGACGAAA
ACGCGGGGAGGTGCAGCGGCGAAAACAGCCTCGGAAGNTTCTTGTGCCCGGCTCTTGGCG
GCAACATGGTGAGCATCGACGCATCATTCCAGTGCGACTCCATCATAAATTGCGATGACG
CTCGCGACGAGAAGGGTTGCGACGACGGGCGGTTTTACTGCGAGAACGGCGAAGGACCAA
TATTCGTTTCGAAGAATCAGGTTAAGGACGGCAAGGCAGACTGCAGTGATTGGAGCGATG
AGTGTCCCACCGTGGACGGGTCTAACGGACAAGACGCGTTTTCCTCGCGTGACGAAATGA
TTGAAAATCCATGGCTGCGCGTAATGGTCTNGATTATGGGATTGCTCGCGATTGTCGGTA
ACTTGGTTGTCATCGTGCACGAATCCAAAAAATTGCGGTTCCCCGGAAGAAAGACAACTC
CCGCGATCAGAGCTAACAGAGTACTCATCTTGAATCTCGCGTGCTCAGACTTCCTCATGG
GCGTCTACCTCGTGTTGCTCGGAAGCATCGCCGTGCAAATGAAGGGCGAATACTGCAGTA
AATATATCGAATGGCGCACCAGCTCTTTCTGCGTCTCTCTCGGAATACTGTCGGTAATAT
CCAGCGAGACTTCGGTGATGACGATGGTGATTCTGACGGGATGCAGGCTCTACGCGATAG
TGCGGGCTTTTCGATCATCCGCAGTGCCTTCCATGCGACACGTGATGTGCTTGGTGTGTG
TGGCGTGGGCAACGTCACTGACGCTCGCTTTGCTCCCGTTATCATCGAGTCTGACGCATT
TGTTCATTGCTGGAGTGGATTTTGTATTCAACCCGTTCGTTATTGGGACGGAGGTTTCGC
TGAACAGCGCTAAAAACGTATTTTCCGTGGTGGCATCGCATTACCTGTGGAACGCGTCGC
AAGATGGCGGCCTCAATTCATTTCTCGACGGAGCCTCTTGGAAATCGTTACAAAACAAAG
GCAACGCAATCGGTATCGAGTACTTCGAACCGAAAACGTTATGGGGGTACTACAGCGCAG
CGAGCGTGTGCATTCCCAAGTTTTTCATATCTACCTCCGACCCAGCCTGGGTTTTTTCCT
TCATTGTGAATCTATTCAATTTTCTCGCCTTCACATTCGTTGCCGTTTCCTACGTCATAA
TATATATGTCTTCTCGACGAAATCCTGCCACGATACGGAATCGAGACGTCGAAAGAAAGC
TGATGAGAAGAATGCAAAGAAAGATCCTGAGATTGGTGGCCACAGACTTCTGCTGTTGGG
TCCCGGTATGCGTCATGGCCTTCGTCAAACTCGCAGGCTGTCACGTGTCCGACACCGCCT
ACGCGTTTGCCGCCGTCATTCTCTTGCCCCTGAACAGCGCCCTCAATCCTATTCTGTATT
CCGACATTCTGGATACCGTAACGCAGCGAACCATGGGCGCTGTCACGACATGGATCAGCA
GTTTGTCACGTTCCGGCTCGGCGTCATCTAACAACAACAAACCAGACTACATCGACCTGC
AACTTGATGCTTTGAAGACCGTACCTGATTGCCCGCCGCAAAAAGACGTGGAGGATGGTA
AAATCATGCAGGACTCGCCGCTTGCCGTAAACGTCGAGGCGGCTGGTAAAGTCGGCGATG
ACTGAT
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[28-68] 0.3 - T[134-176] 0.014 - T[215-253] 0.096 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[50-663] 1.1E-98 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[134-175] 9.325 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[216-250] 4.00936E-4 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[216-253] 5.89E-5 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[274-298] 3.6E-13 - T[315-336] 3.6E-13 - T[367-389] 3.6E-13 - T[403-424] 3.6E-13 - T[574-598] 3.6E-13 - T[611-637] 3.6E-13 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[289-629] 22.979 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[314-424] 1.7E-10 - T[510-629] 1.5E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSHR_HUMAN | 33.133 % | 92.8 | 1.86E-19 |
| LSHR_HUMAN | 33.133 % | 94.4 | 5.71E-20 |
| FSHR_HUMAN | 29.834 % | 87.4 | 8.75E-18 |