- Clone 'cilv070e13' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g65609.01.t
Possible name(s)
PHF2; PHF8
Gene model
Location
chr5 [7,489,956 / 7,493,298]
Amino acid sequence
Length: 1,113
>Boschl.CG.Botznik2013.chr5.g65609.01.p
MLAFGVSDVKVPGFWNFIVDHLFSNRRFTKKEKHTAKRLGLKFWEKHETEILARLNDIGS
QSDNVESIRDVDCMGLDDVEGVDSKRTSDVALVDSYSLSSHESIPSDHDTCEFDKEVDFT
SNSTSLQPNSPPCESDEVAKSLKNTRSVSTPDNDGRDSPLSLDIHHDQEIPSEQQPNQHP
TPETSHPFGKTPVWIGEDLPNECSFEISQDDWKSIADSVVGRTITLNTWTDIVRAGLKGS
NPYCSYAFKRHNFNGLNSNHVLVCYGKCTFKSCLGKIKILCHCANPRKFQVFFSGKIIHV
GIKSTRLSGKRRLEFKKLLRNGKPRETALHFLGKIPEHVFQSGNRDGSPSQSVLKKAKQE
ANKIDVPDADQWAALDMIRQRQVARDQDKEIYGTLQDFSRKAGFILLWSEESLRIFHKLG
AIDAMYLDCTGSIMRGMDKTYYIYEIVARHPVPRKAPIALASFISCHHDTISVTSFLLQF
RRDEKKLFGPKHTVRKFVCDGSMVLIKSILMIFMEELLDHYLERCYRAVVGKAKPNDLKK
PFIRLCASHIMKNFKYLCKKNPKRFSEMMYIFGLMVISSDWESIRSQVYHLTVLLNTRDE
NLANTSLSYFNQNIEVEKSEITLLLSESSSEEEEEDFEFETDYSFVQEFKTIISSALKLV
NDTACEGTNLFYSPAIFAHFEKYIVPKIPLFTGLLSGDLSRLGIGDEYRNYAAFYKSLQA
SPFQNLTKECRTSGPMEKSNQELKSTRLRGRKCSRLDEFAIIYDELNTALLREFQDSCIL
PLGKKRIRKSIPSSSKDEYKEEVEVWQRSDPNRPPINTVGKYFQPPGKDLRGVNKAKXAG
ISRDKRHRFPLKDRFNCEWVAAPRLNGVPTPSRSILVSSSRWLNSDIIDHFMWMLHCKFP
GIDGLSCSSLYLSSCKPAYTPRSKFVQIININRNHWITVSNVFSSQENEVHIYDSAFNRY
AYRTAATQCSIAKLCRPESQDIIVSFPQVQQQNNTSDCGVFAIAFAISLCHGVRPECAEY
PSPYLRRSCLAMMTSQAIQQLQISTSETLPAVWTSFTIKTYCICFLPFDSDNQEDMVECT
QCKRWFHVNCSVVPISHEVVENESVPWYCSECK
Nucleotide sequence
Length: 3,342
>Boschl.CG.Botznik2013.chr5.g65609.01.t
AATGCTTGCGTTCGGCGTGAGTGACGTCAAGGTACCTGGGTTCTGGAATTTCATCGTAGA
CCACCTCTTTAGCAATCGTAGATTCACCAAAAAAGAAAAACATACCGCAAAAAGATTAGG
TTTGAAGTTTTGGGAAAAACACGAGACTGAGATTTTGGCGAGGTTGAACGATATTGGCTC
GCAATCAGATAATGTCGAGTCAATCAGGGATGTTGATTGCATGGGCCTGGACGATGTTGA
GGGGGTGGATTCCAAACGTACATCCGATGTCGCGCTGGTGGATAGTTATTCACTTTCGTC
ACATGAGAGTATTCCTTCAGATCATGATACGTGTGAATTTGATAAGGAAGTAGATTTTAC
CAGTAATTCAACTTCGCTGCAACCAAACTCTCCACCATGTGAAAGCGATGAAGTGGCCAA
ATCTTTGAAAAATACCCGCTCTGTCAGTACGCCAGATAATGATGGAAGAGACTCGCCGTT
ATCGTTGGACATTCATCATGACCAGGAAATTCCTTCTGAGCAACAGCCAAATCAACATCC
AACCCCGGAGACGTCTCATCCGTTCGGAAAGACGCCTGTCTGGATTGGCGAAGATCTGCC
AAACGAATGCTCGTTTGAGATATCTCAGGACGATTGGAAATCGATTGCCGACTCCGTCGT
TGGCCGGACCATAACATTGAATACCTGGACCGATATTGTGCGGGCTGGCTTGAAGGGGTC
TAATCCTTACTGCAGTTACGCTTTCAAGCGACATAATTTCAATGGATTAAACTCCAACCA
CGTTTTGGTGTGCTACGGCAAATGCACGTTCAAATCATGCCTTGGCAAAATAAAAATATT
ATGCCATTGTGCAAATCCTCGCAAATTTCAAGTTTTTTTCTCTGGAAAAATCATACATGT
TGGTATCAAGTCAACAAGGCTCTCCGGAAAACGCAGATTAGAGTTCAAAAAACTTTTAAG
AAATGGAAAGCCTCGTGAAACAGCGCTGCATTTTCTTGGGAAAATACCCGAACATGTTTT
TCAATCAGGAAACCGCGATGGTTCGCCATCTCAAAGTGTCCTCAAGAAGGCTAAGCAGGA
AGCGAACAAAATTGACGTGCCCGATGCTGACCAGTGGGCCGCTCTGGATATGATTCGCCA
GAGACAGGTAGCTCGGGACCAAGACAAAGAAATCTACGGTACGCTCCAGGATTTTTCTCG
CAAGGCTGGGTTCATTCTGCTTTGGTCTGAAGAATCTTTGCGCATCTTCCATAAACTTGG
GGCAATAGATGCCATGTATCTCGACTGCACAGGTAGCATAATGCGGGGTATGGACAAAAC
GTATTATATATACGAGATCGTCGCTAGACACCCAGTACCTAGAAAAGCTCCTATCGCACT
TGCGTCTTTCATTAGTTGTCATCACGATACTATCAGCGTCACATCATTTCTATTACAATT
CCGACGTGACGAGAAAAAACTATTCGGACCCAAGCATACAGTAAGAAAATTTGTTTGCGA
TGGCAGTATGGTTCTTATAAAATCGATTTTGATGATATTCATGGAAGAACTTTTAGATCA
TTACCTCGAAAGATGCTACCGAGCAGTTGTTGGTAAAGCGAAACCGAATGACTTGAAGAA
GCCTTTCATCAGGCTGTGTGCCAGTCACATAATGAAAAATTTCAAGTACCTATGTAAAAA
GAATCCAAAACGATTTTCGGAGATGATGTATATCTTTGGATTGATGGTGATTTCATCCGA
TTGGGAATCGATTCGATCTCAAGTTTATCACCTGACAGTTTTGTTGAACACTCGCGACGA
AAATTTAGCAAATACCTCTCTTTCCTATTTTAATCAAAACATTGAGGTGGAAAAATCAGA
GATAACTTTGCTGTTATCAGAAAGCTCTTCTGAAGAGGAGGAAGAAGACTTTGAATTCGA
AACAGATTATTCCTTCGTTCAGGAATTCAAGACAATCATTTCATCGGCTCTGAAACTAGT
GAATGACACGGCATGTGAGGGAACAAATCTTTTCTACAGCCCCGCCATATTCGCTCATTT
TGAGAAATATATTGTACCCAAAATCCCACTCTTCACGGGTCTTTTATCTGGAGATTTGTC
TCGTTTGGGAATCGGCGATGAGTATCGCAACTATGCTGCCTTTTATAAATCCTTACAGGC
GTCGCCATTTCAAAATCTAACAAAAGAATGTCGGACGAGTGGGCCTATGGAGAAATCTAA
TCAGGAGTTGAAGTCTACTCGTTTGAGAGGTCGAAAATGCTCTCGTCTCGACGAATTCGC
CATAATTTATGACGAACTGAATACTGCGCTCCTCAGAGAATTTCAGGACAGCTGCATATT
ACCCCTTGGCAAAAAACGCATTCGCAAATCAATTCCTTCATCTTCGAAAGATGAATACAA
AGAGGAGGTGGAAGTGTGGCAAAGGTCCGACCCCAATAGGCCACCAATTAATACCGTCGG
GAAATATTTCCAGCCACCCGGTAAGGATTTGCGAGGGGTTAACAAGGCTAAATNCGCTGG
TATATCCAGGGATAAAAGACATCGCTTCCCGCTGAAGGATCGTTTCAACTGTGAATGGGT
CGCAGCACCACGGCTGAATGGTGTTCCGACACCCTCTCGGAGCATTCTCGTTTCCAGTTC
GAGATGGTTGAACAGTGACATCATCGATCACTTCATGTGGATGTTACATTGCAAATTTCC
GGGTATTGATGGCCTCTCATGTAGTAGCCTTTATCTTTCCAGCTGCAAGCCTGCATACAC
ACCTCGCTCCAAATTTGTGCAAATAATAAATATTAACAGAAATCATTGGATCACTGTCTC
GAATGTCTTTTCGTCCCAAGAAAACGAAGTGCATATATACGATTCGGCATTCAACAGATA
TGCATATAGAACCGCTGCTACCCAATGCTCAATCGCAAAACTTTGTCGACCAGAATCCCA
GGACATAATCGTATCTTTCCCGCAAGTTCAGCAGCAGAATAACACAAGCGATTGTGGTGT
TTTCGCAATCGCATTCGCAATCTCCCTTTGTCATGGAGTGCGGCCAGAATGCGCAGAATA
CCCAAGCCCTTATCTCCGACGATCATGTCTTGCAATGATGACGAGTCAGGCGATTCAACA
ATTACAAATCTCAACAAGTGAAACGTTACCTGCTGTGTGGACCTCGTTTACCATAAAAAC
GTATTGCATCTGTTTCCTGCCATTTGACAGTGACAATCAAGAAGACATGGTGGAATGCAC
TCAGTGCAAGCGATGGTTTCATGTAAATTGCTCTGTGGTTCCTATCTCGCATGAAGTCGT
GGAAAACGAAAGTGTTCCATGGTACTGCTCCGAATGCAAATA
| ProSiteProfiles |
Peptidase_C48_C (IPR003653) - T[759-1009] 8.781 |
| Pfam |
Peptidase_C48_C (IPR003653) - T[928-1016] 3.7E-6 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[1055-1113] 2.44E-11 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[1057-1113] 4.3E-10 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[1059-1113] 9.632 |
| Pfam |
Znf_PHD-finger (IPR019787) - T[1061-1113] 9.9E-9 |
| SMART |
Znf_PHD (IPR001965) - T[1061-1113] 3.6E-10 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[1062-1112] . |
| Protein Name | Identity | Bit Score | e-value |
|---|