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TRANSCRIPT CARD

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  1. EST 'rma003p07' > 
  2. Transcript 'Cisavi.CG.ENS81.R489...' > 
  3. Region 'REG00001231' > 
  4. Transcript 'KH2012:KH.L119.10.v1...' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g64947.01.t

Possible name(s)

BRIP1; RTEL1; RTEL1-TNFRSF6B

Gene model

Boschl.CG.Botznik2013.chr5.g64947

Location

chr5 [6,894,974 / 6,896,906]

Sequences

Amino acid sequence

Length: 325

>Boschl.CG.Botznik2013.chr5.g64947.01.p
MDPHKLLLHGIEVEFPFDPYPEQLHYMKCVIESLQTGNNAILESPTGTGKTLCLLCATLA
WRRAEIKQRAEKLGQNIAGAGAEPDYPLGWNGGDARPDQEAQAAQQVPSAPRIIYASRTH
SQLAQVVKELKRTAYAKDTKLSILGSRNQMCIHPEVSKQTNNVAMIHSCRNKVNKHLCHF
YNNVENVRKSGSFTNEILDIEELVELGKKRNACPYYAAREQSKDADCGILLTPYNYLLDR
KSRRANNLEVSGNIIIFDEAHNLERICEESASFDLTSMDIAKCITETGELLKAAVKMSET
GIVPDGYEAGKMAVKLDYILIMHCL

Nucleotide sequence

Length: 978

>Boschl.CG.Botznik2013.chr5.g64947.01.t
TGGATCCACATAAGTTGCTTTTACACGGGATCGAAGTCGAGTTTCCGTTCGACCCCTATC
CGGAACAACTACACTACATGAAATGCGTGATTGAATCCCTGCAAACTGGGAACAACGCCA
TTCTGGAATCTCCAACCGGTACTGGCAAAACTTTATGTCTCCTCTGCGCAACATTAGCTT
GGAGAAGAGCAGAGATCAAGCAAAGGGCTGAAAAACTGGGTCAAAATATTGCCGGTGCAG
GGGCAGAACCAGATTATCCTTTAGGCTGGAATGGAGGTGATGCCCGACCGGACCAGGAGG
CACAGGCTGCACAGCAAGTCCCGTCAGCCCCCAGGATTATTTACGCATCCCGTACCCATT
CCCAATTGGCTCAAGTGGTCAAAGAATTAAAAAGAACAGCGTACGCTAAAGATACAAAAT
TAAGCATCCTCGGATCACGTAATCAGATGTGCATCCATCCCGAGGTCTCGAAGCAGACTA
ATAACGTTGCTATGATTCATTCGTGCCGTAACAAAGTGAACAAGCATCTGTGCCACTTTT
ACAATAATGTGGAAAACGTACGTAAATCTGGATCGTTTACGAATGAAATTCTGGATATCG
AGGAGTTGGTTGAGCTCGGGAAAAAGCGAAATGCTTGTCCGTATTATGCTGCGAGGGAAC
AATCGAAAGACGCAGATTGCGGGATATTGCTGACGCCTTACAACTACCTACTGGATCGCA
AATCGCGCCGCGCCAATAACCTCGAAGTTTCGGGAAATATCATAATCTTCGACGAAGCTC
ACAACTTGGAGAGGATCTGCGAGGAATCGGCGTCTTTCGATCTCACATCCATGGACATAG
CGAAGTGCATAACGGAGACTGGGGAGCTGTTGAAGGCGGCCGTTAAAATGTCGGAAACAG
GGATTGTTCCTGACGGATATGAAGCAGGTAAAATGGCTGTGAAATTGGATTATATCTTAA
TTATGCACTGTCTGTAAG

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[2-65] 2.91E-13 - T[111-146] 2.91E-13 - T[209-264] 2.91E-13
ProSiteProfiles
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[9-306] 28.743
SMART
Helicase-like_DEXD_c2 (IPR006554) - T[11-304] 1.5E-65
Pfam
DEAD_2 (IPR010614) - T[115-279] 2.7E-52

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ERCC2_HUMAN 27.987 % 120 5.29E-30
FANCJ_HUMAN 41.143 % 139 1.6E-36
RTEL1_HUMAN 50 % 275 3.63E-84