Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g55507.01.t

Possible name(s)

INPP5D; INPP5E; SYNJ1

Gene model

Boschl.CG.Botznik2013.chr5.g55507

Location

chr5 [12,176,980 / 12,178,966]

Sequences

Amino acid sequence

Length: 661

>Boschl.CG.Botznik2013.chr5.g55507.01.p
MNTTTAEISVETTLSHGANIHPKHFIFHKNNSFPQFQANDDPRRKNPLLEAATSVPGKRI
LPPIEDADVKRFRAFSQSASSGGNDENETDDLQNPGESADIENDKLNAISQQLSQSLDNS
SSGSNSASQLDDSADSSDSLHSRFFQAMNLSKLRSSSPTISTYSLPVPYSSSGLSPRDDD
TKSTVSDCVTIKTSASAKQLVLKLRKDFEKMIPKEPRPSSTENEAESSTWDEEGLHFHSL
PVGGDSIQQDLDLDDGDMTQEAFSYESTDYEEQETPKLPYTQSSGILPAIPSDKTRERSY
LVGGLTKHGSLLGIDELHRYFPDRNLKVFVGTWNMQKKGIPKNLDDFVLPKEQEYLQDMY
VIGVQEATQDQKMWEIKLQETLGVNHVLAHSVSHGVLHLSVFVRRDLIWFCSSFEDDKVT
VRMVSHVKTKGAVAIGFQFFGTSLLFINSHFHSGESRLKERLGDYLKIKEKLKLPKMGKS
GGYHRNGDATSNYDCVFWFGDLNFRVNLPASILLDEIEGNGSMNVKEALKGDQLSKIMRK
RKAFENFSEHRIRFNPTYKLIPGSDNYSCLPKQRTPSYTDRILFKNKEPNHITCKSYDSV
TNLKTSDHRPVHAFFDVRLKPGRDNVSFGVGKFRNDVYEKAARLRALGDDYQNGSSVCNI
L

Nucleotide sequence

Length: 1,986

>Boschl.CG.Botznik2013.chr5.g55507.01.t
TATGAACACAACGACAGCTGAAATTTCAGTTGAAACGACGCTTTCTCATGGCGCCAACAT
ACACCCAAAGCACTTTATTTTTCATAAAAACAATTCTTTCCCCCAATTCCAAGCTAATGA
TGATCCGCGACGTAAAAATCCTCTATTAGAAGCTGCCACGTCTGTGCCGGGCAAACGCAT
CCTACCTCCAATCGAAGACGCGGATGTAAAGCGTTTTCGAGCCTTTTCACAGTCGGCGTC
ATCCGGTGGCAATGATGAAAACGAAACTGATGATCTTCAAAATCCAGGAGAATCGGCGGA
TATAGAGAACGACAAACTCAATGCAATTAGTCAGCAATTATCTCAATCATTAGATAACTC
GTCATCCGGCAGCAACTCAGCATCACAGCTGGATGATTCCGCCGATAGCAGCGACAGCCT
GCATAGCCGATTTTTTCAAGCTATGAATTTGAGTAAGCTGCGAAGTTCGAGCCCAACTAT
ATCAACCTACTCGCTGCCAGTTCCGTACAGTTCGTCTGGCTTGTCGCCGCGTGATGACGA
CACAAAGAGTACGGTATCGGATTGTGTCACCATCAAAACGTCGGCTTCCGCGAAGCAGTT
GGTTTTAAAGCTCCGTAAAGATTTTGAAAAGATGATACCAAAAGAACCAAGGCCGTCGAG
TACTGAAAATGAAGCAGAAAGCAGCACGTGGGACGAAGAAGGGCTTCACTTTCATAGTCT
ACCAGTTGGTGGTGATAGTATTCAGCAAGACCTTGATCTTGATGATGGTGATATGACACA
AGAAGCATTTTCGTACGAGTCGACGGACTACGAAGAGCAAGAGACACCAAAACTACCTTA
CACGCAATCATCCGGAATACTGCCCGCTATACCCTCAGATAAAACCCGAGAGCGTAGTTA
CCTAGTGGGAGGCCTGACGAAGCACGGCTCACTCCTAGGCATCGACGAACTGCATCGATA
TTTTCCCGACCGAAATCTGAAAGTGTTTGTAGGTACTTGGAACATGCAGAAAAAAGGAAT
TCCAAAGAATCTAGACGATTTCGTACTGCCGAAAGAGCAGGAATACCTCCAAGACATGTA
CGTGATCGGCGTGCAAGAAGCGACGCAGGACCAAAAAATGTGGGAGATCAAGTTGCAAGA
GACTTTGGGCGTGAATCACGTGTTGGCGCATTCGGTTTCTCATGGCGTGTTGCATCTGTC
GGTATTCGTGAGACGGGACCTTATCTGGTTTTGTTCCTCGTTTGAGGACGACAAGGTGAC
AGTGCGTATGGTGTCTCATGTCAAAACAAAAGGCGCCGTCGCGATAGGATTTCAATTTTT
TGGCACCTCGCTGTTATTTATTAACTCTCACTTTCACTCCGGAGAATCAAGGTTGAAGGA
GAGGTTGGGCGATTACTTGAAGATCAAAGAGAAATTGAAACTGCCGAAAATGGGAAAATC
TGGCGGGTACCATCGTAACGGCGACGCCACGTCGAATTATGACTGCGTGTTTTGGTTCGG
AGACTTGAATTTCAGAGTGAATTTGCCTGCGTCGATATTGCTCGACGAAATCGAGGGCAA
CGGGAGTATGAATGTTAAGGAAGCGCTGAAAGGCGATCAGCTGAGTAAAATTATGAGGAA
ACGCAAAGCATTTGAGAATTTTTCAGAGCACCGAATAAGGTTTAATCCAACGTATAAACT
GATACCGGGTTCGGACAATTATTCGTGTTTGCCCAAACAGCGCACGCCCTCATACACGGA
CCGAATTCTGTTTAAAAATAAGGAGCCTAATCACATAACTTGTAAGAGCTACGACAGCGT
GACTAATCTAAAAACGTCAGATCACAGGCCTGTCCACGCGTTTTTTGACGTCCGACTCAA
ACCTGGGCGAGATAACGTTTCTTTTGGGGTTGGAAAATTCCGTAACGATGTTTACGAAAA
AGCGGCGAGGTTGCGTGCACTCGGGGACGACTATCAAAATGGCAGCTCCGTGTGTAATAT
CTTGTG

InterProScan

Gene3D	Endo/exonu/phosph_ase_sf (IPR036691) - T[302-653] 3.3E-110
SUPERFAMILY	Endo/exonu/phosph_ase_sf (IPR036691) - T[319-620] 3.8E-46
SMART	IPPc (IPR000300) - T[324-623] 1.7E-46
Pfam	Endo/exonuclease/phosphatase (IPR005135) - T[331-608] 5.9E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SYNJ1_HUMAN	31.389 %	145	6.1E-36
INP5E_HUMAN	47.68 %	370	1.22E-119
SHIP1_HUMAN	32.911 %	144	7.58E-36