- Clone 'cien29897' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g17009.01.t
Possible name(s)
SRP72
Gene model
Location
chr5 [26,162,915 / 26,164,961]
Amino acid sequence
Length: 681
>Boschl.CG.Botznik2013.chr5.g17009.01.p
MFSELNKAIHVSDYKQVLKISNKIIHSKEGNKDEKAMQCKVVAFIYLNQFDEALKFIQSN
PEINKSLIFEKAYCQYRLLQINEAFETISDAEELDIRLMELKAQILYKLGSYEDALVLLK
KLVKDCADSSENERKANLLAVSASISLWNDKPSDIKLSLTSYEQMYNKACELLGRGEIGE
AEKMLTDAITKCREYFEQFPEVEEDEIDDELSPLQVQLAYCLQLRGLADEALKIYNQVLR
SRPSDVGLIAIASNNIITINKEQNVFDSKKKLKATLIPDIQRKLVSKQLGLIERNKALLY
MYSNQWDACRKLLKNLQKLDKNSEIPCMIQTAQLSREKNFEKAISHLEDFIENHSDPDLH
SIDLTHIKLTLVQFLYSQGHIDRACSVLDSIESLRHSPAIVSLLISLFEHKKSRESKAVK
VFNEAVVWHKKQKSADKIQKKLMWENAQYSIKHGRHEHAAEMLEKLRLLDRNNVKVLAQL
IFAYSQFNPTKAHQLSEDLPSLEEMSLSVDVSSLEKNATQLLAPRYVKRQAKQLAKKKGN
KEKEMASGDKAVKMKDVVSEVKADQPIKTDKKKRKKKKRLPKEYDPAIEPDPERWTPLRE
RSYYKGRRRDKKKGVGTGTQGTSGSAVTDNLDMSKHSSTASAPKPAASPQVNSPKPAPAG
ARPKSKQTARNRRKKGKGGAW
Nucleotide sequence
Length: 2,046
>Boschl.CG.Botznik2013.chr5.g17009.01.t
TGTTCTCAGAACTGAACAAAGCCATCCATGTTTCCGATTACAAGCAAGTCTTGAAAATCA
GCAACAAAATCATCCATTCCAAAGAGGGAAATAAGGATGAAAAGGCGATGCAATGCAAAG
TGGTAGCTTTCATCTACTTGAACCAGTTCGACGAGGCTTTGAAATTCATCCAATCCAATC
CCGAAATTAATAAGAGTTTGATATTCGAAAAAGCGTACTGTCAGTATCGCTTGCTGCAAA
TCAACGAGGCTTTTGAAACGATCAGCGATGCTGAAGAGCTTGATATCCGCTTAATGGAGT
TGAAGGCACAAATTCTGTATAAACTTGGTTCTTATGAAGATGCCCTTGTGCTGCTTAAAA
AGCTGGTCAAAGACTGCGCGGATTCGTCAGAAAATGAACGCAAAGCAAACCTTCTTGCCG
TGTCTGCCTCGATTTCTTTATGGAACGACAAACCGTCTGACATTAAGCTGTCTCTGACCT
CGTATGAGCAAATGTACAACAAGGCATGCGAACTTCTCGGCAGAGGAGAGATCGGCGAAG
CCGAGAAAATGCTGACGGATGCTATCACAAAGTGTCGCGAATATTTCGAGCAGTTTCCAG
AAGTGGAAGAGGATGAGATTGATGACGAATTATCTCCGTTACAAGTGCAGTTAGCTTACT
GTCTTCAACTTAGAGGTCTTGCGGATGAAGCTTTAAAAATATACAATCAGGTTCTCCGCT
CGCGGCCTTCAGATGTAGGCCTGATTGCTATTGCGTCAAATAACATCATTACGATCAACA
AGGAACAGAATGTGTTCGATTCTAAGAAGAAGTTGAAAGCGACTTTAATTCCTGACATTC
AAAGGAAATTGGTGTCAAAACAACTTGGTTTGATCGAAAGAAATAAAGCTCTTTTGTACA
TGTACTCGAACCAGTGGGACGCGTGCCGAAAGCTGCTAAAAAATCTTCAAAAATTGGACA
AAAACAGCGAGATTCCGTGCATGATCCAAACCGCGCAGCTGAGCAGAGAAAAGAATTTTG
AGAAAGCAATATCTCATTTGGAGGATTTCATTGAAAATCATAGCGACCCTGATTTACATT
CCATCGATTTAACTCACATCAAGTTGACTTTAGTCCAATTCTTGTACAGCCAAGGACATA
TCGATCGAGCCTGCAGTGTCCTCGACAGCATTGAATCTCTACGTCACTCCCCTGCGATTG
TATCTCTCTTAATTTCGCTTTTCGAGCACAAAAAAAGCAGAGAATCGAAAGCAGTTAAAG
TCTTCAACGAAGCCGTTGTTTGGCATAAAAAGCAAAAAAGTGCGGACAAAATCCAGAAGA
AATTAATGTGGGAAAACGCGCAGTACAGCATCAAACACGGTCGTCACGAACACGCTGCTG
AAATGCTTGAAAAGTTACGGTTACTGGATCGCAACAACGTTAAAGTTTTGGCCCAGCTGA
TATTCGCTTACTCTCAATTCAACCCGACTAAAGCTCACCAGCTCAGCGAAGATTTACCTT
CTCTCGAGGAAATGTCGCTGTCTGTAGATGTGAGCAGTTTGGAGAAGAACGCGACACAAT
TGTTGGCGCCTAGATACGTGAAAAGACAGGCTAAGCAACTGGCCAAAAAGAAAGGGAATA
AAGAAAAAGAAATGGCTTCTGGAGATAAAGCTGTGAAAATGAAGGACGTAGTTTCCGAGG
TAAAAGCGGACCAACCGATCAAGACCGACAAGAAAAAACGCAAGAAAAAGAAGCGTTTAC
CAAAGGAATACGACCCAGCCATCGAACCAGACCCTGAAAGATGGACCCCGCTGCGCGAGA
GGTCTTACTACAAAGGCAGGAGGCGCGACAAGAAAAAAGGTGTCGGTACCGGCACGCAAG
GAACATCTGGATCAGCAGTCACTGATAATTTAGATATGTCAAAACACAGCAGTACCGCAA
GCGCCCCGAAGCCTGCGGCTTCCCCGCAGGTTAATTCGCCGAAGCCTGCCCCGGCCGGGG
CTAGGCCTAAATCGAAACAGACGGCCAGGAATCGCAGGAAAAAGGGTAAAGGTGGGGCTT
GGTGAG
| PIRSF |
SRP72 (IPR026270) - T[1-680] 4.8E-176 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[1-155] 1.6E-41 - T[156-274] 1.9E-6 - T[285-522] 1.0E-11 |
| PANTHER |
SRP72 (IPR026270) - T[2-677] 3.0E-184 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[12-124] 1.29E-7 - T[155-241] 1.32E-11 - T[286-354] 1.32E-11 - T[295-487] 1.55E-5 |
| Pfam |
SRP_TPR-like (IPR031545) - T[13-143] 5.8E-22 |
| SMART |
TPR_repeat (IPR019734) - T[96-129] 350.0 - T[162-195] 25.0 - T[212-245] 10.0 - T[290-323] 99.0 |
| Pfam |
TPR_repeat (IPR019734) - T[216-244] 0.082 |
| Pfam |
Signal_recog_part_SRP72_RNA-bd (IPR013699) - T[555-606] 1.7E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRP72_HUMAN | 40.516 % | 431 | 1.09E-142 |