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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C14.172.v1...' > 
  2. Clone 'AHC0AAA92YN15' > 
  3. Clone 'cima033p07' > 
  4. Clone 'cima056e21' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr4.g60961.01.t

Possible name(s)

SQSTM1

Gene model

Boschl.CG.Botznik2013.chr4.g60961

Location

chr4 [2,378,954 / 2,382,387]

Sequences

Amino acid sequence

Length: 263

>Boschl.CG.Botznik2013.chr4.g60961.01.p
MKRFVVSGKNSRSDTGSIRMETPSINTLTDSHATRLHLTRPFNGFPINFLTPGALDLGGI
QRSIISNSIRRLVKMRNHPLQLALMAAIRNKVSHKALQRLLLTNTPDGPQAYLNSVGQAV
AGFLKPLGVDVDIDVEHHGTRTKCAESEIKKKQREEAEKAQSSSETPPKSTEDPEPVPTA
PRDGDWTVVSDDNDQEQTDASETMNVDVELPSDMDPRLASALKQMFAMGFSDEGGWLSRL
LEAHDFNIPRALDAIQPNGGMRA

Nucleotide sequence

Length: 792

>Boschl.CG.Botznik2013.chr4.g60961.01.t
TGAAACGTTTTGTGGTCAGTGGCAAAAATTCCCGTTCGGACACGGGCAGTATCCGCATGG
AAACACCTTCCATCAATACCCTCACGGACAGCCACGCCACGCGCCTCCATCTTACCCGTC
CTTTCAACGGTTTCCCAATCAATTTCCTCACTCCTGGGGCTTTGGACCTTGGGGGCATCC
AGCGCAGCATTATCAGGAACAGCATCAGACGCCTGGTGAAAATGCGCAATCATCCTCTTC
AGCTAGCGCTGATGGCCGCTATCAGGAACAAAGTCAGTCACAAGGCCCTGCAGAGACTGG
TGCTGACAAATACCCCTGACGGGCGCCAGGCGTACTTGAACAGCGTAGGCCAAGCTGTGG
CCGGCTTCCTGAAACCGCTTGGTGTCGACGTTGATATAGACGTGGAGCATCACGGAACAA
GGACCAAGTGTGCTGAGAGCGAGATAAAGAAGAAACAGAGGGAGGAAGCGGAGAAGGCGC
AAAGCTCGTCCGAAACGCCTCCTAAGAGCACTGAAGGTCCTGAGCCAGTTCCGACAGCCC
CGCGGGACGGTGATTGGACCGTAGTCTCTGACGATAACGACCAAGAACAGACTGGTGCAT
CCGAGACCATGAATGTAGATGTAGAGTTGCCCAGCGACATGGGTCCGCGCCTGGCGTCTG
CCTTGAAGCAGATGTTCGCGATGGGATTCAGCGACGAAGGCGGATGGCTTTCCCGCCTGT
TGGAAGCGCACGATTTCAACATTCCTCGCGCGCTGGACGCGATACAGCCGAACGGCGGGA
TGAGAGCTTGAT

InterProScan

Pfam
SQSTM_UBA (IPR033741) - T[210-256] 6.9E-18
SUPERFAMILY
UBA-like_sf (IPR009060) - T[212-258] 1.53E-14
ProSiteProfiles
UBA (IPR015940) - T[213-258] 8.571
CDD
SQSTM_UBA (IPR033741) - T[217-256] 2.5369E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SQSTM_HUMAN 29.442 % 76.6 6.33E-16