Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr4.g47837.01.t

Possible name(s)

TUBB; TUBB2B; TUBB4B

Gene model

Boschl.CG.Botznik2013.chr4.g47837

Location

chr4 [3,569,527 / 3,571,223]

Sequences

Amino acid sequence

Length: 447

>Boschl.CG.Botznik2013.chr4.g47837.01.p
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGVYHGDSDLQLERINVYYNEASGGKYV
PRAVLVDLEPGTMDAVRSGPFGQLFKPDSFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RREAEGCDCLQGFQLTQSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRILSVPELTQQMFDAKNMM
AACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATADEEGEFESEGEGEVDED

Nucleotide sequence

Length: 1,344

>Boschl.CG.Botznik2013.chr4.g47837.01.t
TGAGAGAAATCGTCCATCTGCAAGCCGGCCAATGCGGTAATCAAATCGGAGCCAAGGTCT
GGGAAGTAATTTCCGATGAACACGGTATCGACCCAACTGGTGTATATCATGGCGACAGCG
ACCTACAGCTGGAACGAATCAACGTATACTACAATGAAGCGTCAGGTGGAAAATATGTAC
CAAGAGCCGTGTTGGTAGATCTTGAACCAGGAACTATGGATGCGGTAAGGTCCGGGCCGT
TCGGACAGTTGTTCAAACCAGACAGCTTCGTGTTCGGTCAAAGCGGAGCGGGTAATAACT
GGGCTAAAGGACATTACACAGAAGGGGCCGAACTTGTAGATTCGGTGCTTGACGTGGTCA
GGCGAGAAGCGGAAGGGTGTGACTGTTTACAAGGATTCCAATTGACCCAATCCCTCGGCG
GTGGTACTGGTTCTGGAATGGGCACGCTTTTGATCAGCAAGATCCGAGAGGAGTATCCCG
ATAGAATAATGATGACATTCAGCGTCGTCCCATCTCCAAAAGTTTCGGACACTGTCGTAG
AACCCTACAACGCCACCCTTTCAGTTCATCAGCTCGTAGAGAACACCGACGAAACATACT
GCATCGACAACGAAGCTTTATACGATATCTGCTTCCGTACTTTGAAGTTGACCACCCCGA
CTTATGGAGATTTAAACCATCTGGTATCCGCCACGATGAGTGGAGTCACTACGTGCCTCC
GATTCCCCGGTCAGTTGAACGCGGATTTGCGTAAATTGGCCGTTAACATGGTTCCATTCC
CCCGATTGCACTTCTTCATGCCTGGCTTCGCCCCGCTCACGAGTCGCGGCAGTCAGCAGT
ACCGCATCCTCAGCGTTCCCGAGCTCACCCAGCAGATGTTCGATGCTAAGAATATGATGG
CCGCTTGCGACCCGCGCCACGGACGATACCTGACTGTGGCGGCTATGTTCCGTGGCCGGA
TGTCGATGAAGGAAGTCGACGAGCAAATGCTGAACATACAAAACAAGAACAGCTCCTACT
TCGTCGAATGGATTCCAAACAATGTTAAGACCGCTGTCTGTGATATTCCACCGCGTGGAC
TCAAGATGGCCGCGACTTTCGTAGGCAACAGCACCGCCATTCAGGAACTCTTCAAAAGAA
TTTCCGAGCAGTTCACGGCTATGTTCCGCCGAAAGGCTTTCTTGCATTGGTACACTGGCG
AAGGTATGGATGAGATGGAGTTCACTGAGGCCGAGAGCAACATGAACGACTTGGTGAGCG
AGTACCAACAGTATCAAGACGCTACCGCCGACGAGGAAGGTGAATTCGAGTCCGAAGGAG
AGGGAGAAGTCGATGAAGATTAGT

InterProScan

Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-263] 2.0E-126
ProSitePatterns	Beta-tubulin_BS (IPR013838) - T[1-4] .
SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-243] 1.96E-101
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[3-211] 4.7E-68
PRINTS	Tubulin (IPR000217) - T[10-30] 2.7E-104 - T[51-70] 2.7E-104 - T[93-104] 2.7E-104 - T[106-130] 2.7E-104 - T[132-150] 2.7E-104 - T[151-172] 2.7E-104 - T[176-189] 2.7E-104 - T[190-210] 2.7E-104 - T[370-398] 2.7E-104
PANTHER	Tubulin (IPR000217) - T[12-443] 0.0
PANTHER	Beta_tubulin (IPR002453) - T[12-443] 0.0
PRINTS	Beta_tubulin (IPR002453) - T[41-58] 5.0E-123 - T[88-99] 5.0E-123 - T[108-126] 5.0E-123 - T[152-164] 5.0E-123 - T[212-224] 5.0E-123 - T[230-239] 5.0E-123 - T[245-258] 5.0E-123 - T[265-281] 5.0E-123 - T[311-329] 5.0E-123 - T[329-343] 5.0E-123 - T[347-370] 5.0E-123 - T[377-388] 5.0E-123 - T[412-430] 5.0E-123
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[47-244] 2.5E-69
ProSitePatterns	Tubulin_CS (IPR017975) - T[140-146] .
SUPERFAMILY	Tub_FtsZ_C (IPR008280) - T[244-429] 1.07E-83
SMART	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[246-383] 7.8E-50
Pfam	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[261-381] 4.7E-42
Gene3D	Tubulin/FtsZ_C_sf (IPR037103) - T[264-373] 9.1E-57
Gene3D	Tubulin_C (IPR023123) - T[374-444] 1.7E-36

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
TBB4B_HUMAN	96.253 %	847
TBB2B_HUMAN	94.884 %	846
TBB5_HUMAN	95.105 %	843