Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr2.g41615.01.t

Possible name(s)

PABPC1; PABPC1L; PABPC4

Gene model

Boschl.CG.Botznik2013.chr2.g41615

Location

chr2 [4,556,488 / 4,560,937]

Sequences

Amino acid sequence

Length: 366

>Boschl.CG.Botznik2013.chr2.g41615.01.p
MVSVSLKSVPASYTRMISMWCGGDGQRLERSESMGIDTNFTTVNLTQYCRIVIIMSMAVH
KNIHVKEDVISSSEPRQVPSIADQVKXGKKNKFPGYNLYIKNLDDSFTDATLRESFDRFG
TITSAKVMCDSSGQSKXFGFVCFATKEEADEAVLEMNGRIVGTXPLYVAIAQKKEERKQY
LSNRYKSLSNDSSNPHIQTPSMTMHPAVQIQEPMPASYVPVNSAINPNVPLRSNYPGVSY
VMPVNPALTYMPMSYQPLFLLPNIVQPPXAHMPVLHQPIYLHSSKTNTLIYSTGMQTVPX
QMPVPGXQVYTSSPETVENSGVADNAVHTIPTRSMQNHKEAPDPSDDXIDTCLADDIQNK
VTLHSD

Nucleotide sequence

Length: 1,101

>Boschl.CG.Botznik2013.chr2.g41615.01.t
TATGGTGTCGGTGTCGTTAAAGAGTGTCCCGGCGTCTTATACTCGTATGATTTCAATGTG
GTGCGGCGGCGATGGCCAACGCCTCGAACGCTCCGAGAGCATGGGTATAGATACCAATTT
TACCACAGTCAATTTGACCCAATACTGTCGAATAGTCATTATAATGTCCATGGCAGTTCA
CAAAAATATACATGTTAAAGAGGACGTAATTTCCTCCTCAGAGCCTCGTCAGGTTCCTTC
TATTGCTGATCAAGTGAAAGANGGGAAGAAAAACAAATTTCCGGGATATAATTTGTACAT
AAAGAATCTGGACGACTCTTTCACCGATGCTACTTTGAGGGAATCTTTCGACAGGTTTGG
CACCATCACCAGCGCCAAAGTCATGTGTGACAGTAGTGGGCAATCCAAAGGNTTCGGATT
TGTTTGTTTCGCTACAAAGGAAGAAGCCGATGAGGCTGTACTAGAAATGAATGGTAGGAT
CGTTGGCACAAANCCACTTTACGTTGCGATAGCACAGAAAAAGGAAGAGAGAAAGCAATA
TCTGAGCAACAGATATAAAAGCTTGAGTAACGATTCCAGCAACCCTCATATACAAACACC
CTCAATGACGATGCACCCGGCTGTGCAGATACAAGAGCCCATGCCGGCATCGTATGTCCC
TGTCAACAGTGCTATTAATCCCAATGTGCCATTAAGGTCAAACTACCCAGGAGTTAGCTA
TGTTATGCCTGTTAATCCGGCACTGACGTACATGCCAATGTCCTATCAGCCACTGTTTCT
GTTACCTAACATTGTTCAACCACCTTNTGCGCACATGCCGGTTTTACACCAGCCGATATA
TCTGCATTCTTCCAAGACGAACACTCTTATCTATTCTACTGGCATGCAAACTGTGCCACN
TCAAATGCCAGTACCTGGAATNCAAGTGTACACTTCCAGTCCTGAAACCGTGGAAAATAG
TGGTGTTGCGGACAATGCCGTGCACACAATCCCTACAAGAAGCATGCAAAATCATAAGGA
AGCACCCGACCCTTCAGATGATGTNATTGATACTTGCCTGGCTGATGACATTCAGAATAA
GGTCACCTTACACTCTGACTG

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[60-183] 3.2E-25
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[90-194] 6.24E-27
ProSiteProfiles	RRM_dom (IPR000504) - T[96-173] 17.711
SMART	RRM_dom (IPR000504) - T[97-169] 4.9E-21
Pfam	RRM_dom (IPR000504) - T[98-164] 1.4E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PABP1_HUMAN	59.223 %	130	1.47E-33
PABP4_HUMAN	60.194 %	132	4.49E-34
PAP1L_HUMAN	46.199 %	134	1.05E-34