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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr2.g07976.01.t

Possible name(s)

SDE2; SF3A3

Gene model

Boschl.CG.Botznik2013.chr2.g07976

Location

chr2 [6,120,447 / 6,121,923]

Sequences

Amino acid sequence

Length: 491

>Boschl.CG.Botznik2013.chr2.g07976.01.p
MHEEKDRLYDAMTKESGYKKSSTREQINSDHRMRFLLDRLMDNALRLQDMYEDNDGLRKR
EIQAIAGPNEFGEFYKRLKEIKDFHKAHPNEIFVPMSMEFEELNKARDCTADEATVLAEF
TDEESYGRFLDLHESYMRYINLKGTEKMSYVRYLDSFDRMFEIARDNKNSQYKEYLDSLM
QYLVSFVERIKPLLDLNTEYEDVYKKFEVQWEANDFPGWGKEAGSAMAHSGAHLDLSAFS
SSEELASLGLDRLKSALMALDLKCGGTLDQRADRLFSTKGKKMEEINSALFAKGKRNKMS
AKNIERFKEIASLEAWIYYLVELLSEQRAATKDNVQRRQARTGNERDEDDEDVASDSDSG
DDDDEVIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNQIYRGPKAFQRHFSEWR
HAHGMRCLGIPNTAHFANVTKIEDAMALWSKIKEMKNAERWNPDHEEEYEDTAGNVVSKK
TYEDLKRQGLL

Nucleotide sequence

Length: 1,476

>Boschl.CG.Botznik2013.chr2.g07976.01.t
TGCACGAGGAAAAAGACCGACTTTACGACGCCATGACGAAAGAGAGCGGCTACAAAAAGT
CTTCGACCCGCGAACAAATCAACTCGGACCACAGAATGAGATTTTTGTTGGACCGACTAA
TGGACAACGCGTTACGGTTACAAGACATGTACGAAGATAATGACGGACTGCGGAAACGAG
AAATCCAAGCAATCGCAGGACCGAACGAATTTGGGGAATTCTACAAACGCCTGAAGGAAA
TCAAGGACTTCCACAAGGCCCATCCCAACGAAATATTCGTTCCAATGTCCATGGAGTTTG
AAGAATTGAATAAAGCCCGCGACTGTACAGCTGATGAAGCGACTGTGCTGGCGGAATTCA
CGGATGAAGAATCGTACGGTAGATTCTTAGATCTTCACGAATCTTACATGCGTTACATTA
ACTTGAAAGGCACAGAAAAAATGAGTTATGTGCGTTACTTGGATAGCTTCGATCGAATGT
TCGAAATTGCTAGAGACAACAAAAATTCTCAATACAAAGAATACCTTGATTCCTTGATGC
AGTATCTAGTGTCTTTTGTCGAACGTATTAAACCTTTACTCGACTTGAACACTGAGTATG
AAGATGTTTACAAAAAATTCGAGGTTCAATGGGAAGCGAATGATTTTCCTGGATGGGGTA
AAGAAGCGGGTAGCGCCATGGCGCACTCGGGGGCACATTTGGATTTGAGCGCATTCAGTT
CTTCCGAAGAGCTAGCGTCTTTGGGATTGGATAGATTGAAATCAGCATTGATGGCGCTCG
ATTTAAAATGTGGTGGCACTTTAGATCAACGTGCGGACAGACTATTCTCCACCAAAGGTA
AAAAAATGGAAGAAATCAACTCGGCATTGTTTGCGAAAGGCAAACGTAACAAAATGTCTG
CTAAAAATATTGAAAGATTCAAAGAAATCGCGTCGTTAGAGGCTTGGATCTACTATCTCG
TCGAGCTACTAAGTGAACAGAGAGCTGCCACTAAAGATAATGTCCAACGTAGACAAGCTC
GTACTGGAAATGAGAGAGACGAGGATGACGAAGATGTGGCATCTGACAGTGATTCAGGGG
ATGACGACGATGAAGTTATTTACAACCCCAAAAATTTGCCTTTAGGATGGGACGGAAAGC
CGATTCCTTACTGGTTGTACAAGCTACACGGGTTGAATATAAATTACAACTGCGAAATAT
GCGGAAATCAAATCTACCGCGGTCCGAAAGCGTTCCAACGCCACTTTTCAGAATGGCGTC
ACGCTCACGGAATGCGTTGTCTCGGAATTCCGAACACAGCCCATTTTGCAAACGTCACGA
AAATCGAAGACGCCATGGCCTTGTGGTCTAAAATCAAAGAAATGAAGAATGCGGAGCGTT
GGAACCCTGATCACGAGGAGGAATATGAAGATACTGCCGGCAATGTGGTGTCTAAGAAGA
CTTACGAGGATCTGAAGCGTCAAGGGTTGTTGTGAA

InterProScan

PANTHER
SF3A3 (IPR031776) - T[1-491] 1.2E-175
Pfam
SF3a60_bindingd (IPR021966) - T[64-90] 8.7E-13
Pfam
SF3A3_dom (IPR031774) - T[119-196] 9.6E-24
Pfam
DUF3449 (IPR024598) - T[314-490] 2.0E-76
ProSiteProfiles
Matrin/U1-C_Znf_C2H2 (IPR000690) - T[396-427] 9.222

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SF3A3_HUMAN 65.714 % 662 0