- Molecular Tool 'FoxB-MO (Hitoyoshi's MO)' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.S1391.2.v2...' >
- Transcript 'KH2012:KH.S1391.2.v2...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr13.g64363.01.t
Possible name(s)
COP1; WDR5; WDR5B
Gene model
Location
chr13 [1,332,262 / 1,334,203]
Amino acid sequence
Length: 646
>Boschl.CG.Botznik2013.chr13.g64363.01.p
MKRIASSESAASSSTSDSSRPLPSVLGTFRGINEDFICPICFDLIEEAHMTRCGHSFCFA
CLKRSLEESNKCTKCDSIIERKDEIYPNFALNEIIRKQRKKIQDLTATSKRLKMDSRLWE
WQTFLATEEDGLLISDLDQMLKTLQEKRRKMLQDNAVVHNKVLLEFLQDLGKKKKTELDK
VRSELAVVDLDIAQVQEALEESKQASVNILHESVVPDQSVKPESMSVEKKEQLVPKPTTS
TMVPSTSSDETFNKPSQSCKSNQSWLLKTLSRRRRKLTLHFDDLKDCYFNTRLSELAPNE
QRNTELLGEFSQNLKQFTQFSTIRPIATLSYASDVLNSSNIVSSIDFDKDCDHFAVAGVT
KKIKVYDYEAVVNNVVDGINYPIVQMVCNSKISCLSWSKYHKSWLASSDYDGSVTLWDAF
TGRKLKMFQEHEKRCWSVDFNNVDLRLLASGSDDAHVKLWSTNTSRSVGCIEAKANVCCV
KFNPRSSFHIVFGCADHFVHYYDIRKPNEALGVFKGHKKAVSYAKFVSNEDIVSASTDSE
LKLWNINSPNCTRSFRGHTNEKNFVGLATDGRYIACGSENNSLYVYYKGLSNPLLTYKFD
VVKSVLDRDHREEDGNEFVSSVVWRENSNILTAANSQGTIKILELV
Nucleotide sequence
Length: 1,941
>Boschl.CG.Botznik2013.chr13.g64363.01.t
CATGAAACGAATTGCGAGTAGCGAAAGTGCTGCATCTTCTAGTACCTCAGATTCATCAAG
ACCTTTACCATCGGTGCTCGGCACATTTCGGGGAATAAACGAAGATTTTATTTGTCCGAT
ATGTTTCGACCTGATTGAAGAAGCACACATGACTCGCTGCGGACATTCTTTCTGCTTTGC
TTGTTTAAAACGGAGTTTGGAAGAGAGCAATAAATGCACTAAATGCGATTCTATAATAGA
AAGAAAGGACGAGATTTACCCGAATTTTGCTCTCAACGAAATAATTCGTAAGCAGAGAAA
AAAAATCCAAGATCTGACTGCTACTTCGAAACGACTCAAGATGGACTCGCGCCTTTGGGA
GTGGCAAACGTTTCTAGCTACGGAAGAAGATGGTTTGCTTATATCAGATTTAGACCAAAT
GCTGAAAACGTTGCAAGAAAAACGCAGAAAAATGCTCCAAGACAACGCAGTCGTTCATAA
CAAAGTCCTTCTCGAATTCCTGCAAGATTTAGGCAAGAAAAAGAAGACAGAACTTGACAA
AGTACGGTCTGAGCTTGCAGTTGTGGACCTTGATATTGCGCAAGTGCAGGAAGCTTTAGA
AGAAAGTAAACAAGCTTCCGTTAACATACTTCATGAATCTGTAGTTCCTGATCAATCAGT
GAAGCCAGAGTCTATGTCTGTCGAGAAAAAAGAACAGCTAGTCCCAAAACCTACTACGTC
AACTATGGTACCATCAACATCATCCGATGAAACGTTCAACAAACCTTCCCAATCATGCAA
GTCTAATCAAAGCTGGCTTCTGAAAACATTGTCAAGAAGACGGCGTAAGTTAACACTGCA
TTTTGATGATCTTAAAGATTGCTACTTTAACACGAGATTGAGCGAATTAGCACCAAACGA
ACAACGTAATACGGAGCTGCTTGGAGAATTCAGTCAAAATCTGAAACAGTTCACTCAATT
TTCTACGATACGTCCAATCGCCACGCTTAGCTATGCAAGTGACGTACTCAATTCATCAAA
TATCGTATCAAGCATTGACTTTGACAAAGATTGCGATCATTTTGCTGTAGCTGGAGTCAC
AAAGAAAATCAAGGTTTACGATTATGAAGCAGTCGTGAATAACGTAGTAGACGGTATTAA
TTATCCCATTGTGCAAATGGTTTGTAATTCTAAAATCTCCTGTCTGAGTTGGAGTAAATA
TCATAAGTCCTGGCTTGCGAGCAGTGACTATGATGGTTCTGTTACTTTATGGGATGCATT
CACGGGACGGAAGCTGAAAATGTTTCAAGAACACGAGAAACGGTGTTGGAGTGTTGACTT
TAATAACGTTGACCTTCGACTTCTTGCGTCTGGCTCTGATGATGCACATGTAAAACTATG
GTCTACTAATACTTCTCGTTCCGTTGGTTGTATTGAAGCAAAAGCTAACGTTTGCTGCGT
TAAATTCAACCCCAGATCCAGTTTCCATATTGTGTTTGGTTGTGCCGATCATTTTGTACA
TTATTATGATATTCGAAAACCTAATGAAGCGTTAGGCGTGTTCAAAGGCCATAAAAAGGC
AGTTTCGTACGCAAAGTTTGTGTCTAACGAAGATATCGTGTCCGCCTCCACTGATAGTGA
GCTAAAATTATGGAATATTAACAGCCCAAACTGTACGAGGTCATTCCGTGGCCACACAAA
TGAGAAAAATTTTGTCGGATTAGCGACCGATGGGAGATACATTGCTTGCGGCAGCGAGAA
TAACTCTCTCTATGTGTATTACAAAGGCTTGTCGAATCCGCTTTTGACTTACAAATTTGA
TGTCGTGAAAAGTGTCCTCGATCGTGACCATAGAGAAGAAGATGGCAACGAATTTGTCAG
TTCTGTTGTGTGGCGCGAAAATAGCAACATATTGACTGCCGCAAATAGCCAAGGCACTAT
CAAAATACTAGAACTCGTTTG
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[18-128] 4.9E-18 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[38-76] 11.073 |
| SMART |
Znf_RING (IPR001841) - T[38-75] 1.1E-4 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[53-62] . |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[309-646] 7.6E-131 |
| SMART |
WD40_repeat (IPR001680) - T[322-367] 0.25 - T[379-418] 0.049 - T[421-461] 1.9E-6 - T[464-503] 0.56 - T[507-545] 0.0023 - T[548-587] 0.025 - T[599-644] 100.0 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[335-646] 26.498 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[340-645] 1.96E-54 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[405-419] 1.9E-5 - T[448-462] 1.9E-5 - T[532-546] 1.9E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[405-419] . - T[532-546] . |
| Pfam |
WD40_repeat (IPR001680) - T[423-461] 0.0061 - T[511-545] 0.12 - T[550-586] 0.057 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[428-470] 10.074 - T[514-554] 11.879 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 26.642 % | 85.9 | 4.19E-18 |
| WDR5B_HUMAN | 28.571 % | 87 | 1.62E-18 |
| COP1_HUMAN | 52.786 % | 696 | 0 |