- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr13.g05679.01.t
Possible name(s)
NLE1; WDR12; WDR38
Gene model
Location
chr13 [11,178,818 / 11,180,120]
Amino acid sequence
Length: 433
>Boschl.CG.Botznik2013.chr13.g05679.01.p
MAHIQAKLIAQDSSYQIGGKAFDLPGEVTTVELSNLVNKFLKEKHEDEAGEEADFKASEF
DFLIDGEFLRTALNQYVEAKGLSTESVIPIEYLLKQEGPEPEDQFSEDDWISGVHCLEEF
ALVGSYDCGVTIRKLDDHDTRVQGFGHTEPVKSVSWISRKEDTFYAVSTSQDQSAIIWQW
EKDNETMKPLFCCRGHSKSVDCVAVHPGKAEFVTGSWDASIKLWSASPTPQDDSNEPEDY
QKARNKKKRQRIEQRGITRVPKITMAGHTEAVSDVVWLNDSELCSVSWDHTIRIWDINEA
KEKTNLRGAKVFLACDYSQQNSLLATGNSDRHIRIWDPRNKSDIDSASLVKRNLSSHVGW
VTSVKWSPVDSNQLLSGSLDCAVKLWDIRSPKTPLFDLEAHQDKVMCLDWSNCNVIMSGG
ADKFLYKFRYRSK
Nucleotide sequence
Length: 1,302
>Boschl.CG.Botznik2013.chr13.g05679.01.t
TGGCTCACATACAGGCAAAGTTGATAGCTCAAGATTCGTCGTACCAAATCGGTGGTAAAG
CGTTCGATTTACCGGGAGAAGTGACTACAGTGGAGCTCAGCAATCTCGTGAATAAGTTTT
TGAAAGAGAAACATGAAGACGAAGCGGGCGAAGAGGCTGACTTTAAAGCTTCCGAATTCG
ATTTTTTAATCGACGGCGAATTTTTGAGGACTGCCTTGAACCAGTACGTTGAAGCAAAAG
GGTTATCTACTGAATCCGTGATTCCCATTGAATATCTTCTAAAACAAGAAGGTCCCGAAC
CTGAAGACCAATTTTCGGAAGATGATTGGATCAGTGGAGTACACTGCTTAGAGGAATTCG
CTCTTGTAGGATCCTACGACTGTGGTGTCACTATCCGAAAGCTAGATGATCATGATACAC
GAGTGCAAGGTTTCGGACACACCGAACCAGTAAAATCAGTCTCTTGGATTAGCAGAAAGG
AAGACACTTTTTATGCCGTGAGCACTTCTCAGGATCAAAGTGCTATTATCTGGCAATGGG
AAAAAGATAACGAAACCATGAAACCATTGTTTTGCTGCCGTGGTCACTCGAAAAGCGTAG
ATTGCGTCGCGGTTCATCCAGGAAAAGCAGAATTCGTAACAGGATCGTGGGACGCATCTA
TAAAGTTATGGTCTGCATCACCAACACCACAAGATGATTCTAACGAGCCTGAAGACTATC
AGAAAGCCAGAAATAAGAAGAAAAGGCAACGTATCGAGCAAAGAGGAATTACAAGGGTAC
CGAAGATAACTATGGCGGGTCATACAGAAGCTGTATCCGATGTTGTATGGCTCAATGACT
CTGAATTATGCAGCGTGTCATGGGATCATACGATAAGAATCTGGGATATTAATGAAGCCA
AAGAAAAAACTAATTTACGAGGAGCCAAAGTATTTTTAGCGTGCGATTATTCACAACAGA
ACAGTCTTCTAGCAACGGGAAATTCAGACCGCCACATTCGGATATGGGACCCTCGCAATA
AAAGTGACATCGATAGTGCGTCACTCGTAAAACGAAACCTATCGTCCCACGTCGGTTGGG
TTACATCCGTCAAATGGTCGCCGGTCGACAGCAATCAATTATTATCAGGCTCGTTGGACT
GCGCGGTCAAACTGTGGGACATTCGCAGCCCCAAAACCCCGCTTTTCGATCTTGAAGCCC
ACCAGGATAAAGTCATGTGCTTGGATTGGAGCAATTGCAACGTGATAATGAGCGGAGGGG
CGGATAAGTTTCTGTATAAATTTCGGTATCGCTCGAAATAAA
| Hamap |
WDR12/Ytm1 (IPR028599) - T[2-432] 30.133 |
| Pfam |
NLE (IPR012972) - T[4-76] 2.4E-14 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[99-431] 6.2E-67 |
| SMART |
WD40_repeat (IPR001680) - T[136-179] 4.8 - T[186-225] 3.1E-7 - T[258-296] 2.3E-7 - T[299-337] 0.055 - T[347-387] 1.5E-7 - T[391-429] 0.0036 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[144-433] 32.404 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[145-230] 6.96E-52 - T[257-431] 6.96E-52 |
| Pfam |
WD40_repeat (IPR001680) - T[188-225] 5.1E-6 - T[264-296] 2.5E-4 - T[311-337] 0.0016 - T[352-387] 6.1E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[193-225] 12.079 - T[265-305] 12.146 - T[317-346] 10.241 - T[354-396] 13.316 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[283-297] . - T[374-388] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[283-297] 3.7E-7 - T[324-338] 3.7E-7 - T[374-388] 3.7E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NLE1_HUMAN | 26.019 % | 82 | 8.03E-17 |
| WDR12_HUMAN | 44.186 % | 366 | 2.81E-124 |
