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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr12.g52536.01.t

Possible name(s)

RAB18; RAB2A; RAB2B

Gene model

Boschl.CG.Botznik2013.chr12.g52536

Location

chr12 [7,756,248 / 7,757,796]

Sequences

Amino acid sequence

Length: 203

>Boschl.CG.Botznik2013.chr12.g52536.01.p
MESDVLTTLKILIIGESGVGKSSLLLRFTDDKFDPDQPATIGVDFKVKALTIDGNTVKLA
IWDTAGQERFRTLTPSYYRGAQGVIFVYDCTRADTFSRIGAWLTELETYATKPNIVKMLV
GNKIDKEERVVQRSDGLKFARKHAMLFIEASAKTKDGVQCAFEELVEKIIQTPGLWDKEG
QKGNAGVSLNSGSTVDAGACGSC

Nucleotide sequence

Length: 612

>Boschl.CG.Botznik2013.chr12.g52536.01.t
TGGAATCGGACGTTCTAACAACTCTCAAAATCCTCATCATTGGTGAAAGTGGTGTTGGAA
AATCAAGGTTGCTCCTGAGATTTACGGATGACAAGTTTGATCCAGATCAGCCAGCAACTA
TCGGGGTCGATTTTAAGGTCAAAGCCCTTACAATAGACGGAAACACTGTAAAACTGGCAA
TTTGGGATACAGCAGGACAGGAACGATTTCGTACTCTAACGCCGAGCTACTACAGAGGAG
CTCAAGGTGTTATTTTTGGATACGACTGCACCAGGGCAGACACATTTTCAAGGATAGGAG
CATGGTTAACTGAATTAGAGACTTACGCCACTAAACCTAATATTGTAAAAATGCTTGTTG
GAAACAAAATCGATAAGGAGGAAAGGGTTGTGCAACGTTCTGATGGTTTGAAGTTTGCCA
GAAAGCACGCGATGCTGTTTATTGAAGCTAGTGCCAAGACAAAAGATGGAGTGCAGTGTG
CTTTCGAAGAACTTGTTGAAAAAATCATTCAAACTCCTGGACTATGGGATAAGGAGGGAC
AGAAGGGCAATGCGGGGGTATCACTAAATAGCGGTTCGACTGTGGACGCAGGGGCATGTG
GCTCATGTTGAT

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[6-174] 3.24E-55
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[8-164] 2.7E-32
Pfam
Small_GTPase (IPR001806) - T[10-170] 3.3E-55
ProSitePatterns
Sigma_54_int_dom_ATP-bd_1 (IPR025662) - T[11-24] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB18_HUMAN 78.01 % 304 1.09E-106
RAB2A_HUMAN 50 % 169 2.04E-53
RAB2B_HUMAN 50 % 168 9.85E-53