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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.392.v1....'
  2. Transcript 'Haaura.CG.MTP2014.S2...'
  3. Transcript 'Cisavi.CG.ENS81.R7.2...'
  4. Clone 'cslv010i18'
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr12.g11382.01.t

Possible name(s)

RBM34; RRP7A

Location

chr12 [13,171,351 / 13,176,151]

Sequences

Amino acid sequence

Length: 297

>Boschl.CG.Botznik2013.chr12.g11382.01.p
MNIRVRKFLAPVNLAKIRDFESVMEYTQACPSGYSKIFVKYDSSCKYSHELLFKPDETRK
ENSLKPAGRTLLVANVPPYCSKTNLERIFSKFGKVDSVHLVHALGGESEYHAKPPVVTDL
TDNDRKYFPKKEEYGCPFAFIVYQDKSSITKAMGQTIKVAPTLLSRNEAIGMKKWAQEYY
SQFPNQDELKTNIDAYMARYDRAILQREEQEKLAGEEDNDGWTKVTKGGKTPFIARTEAN
QLKAKEKRRNRSRDLLNSYSYQIRESKRQKIAELREKFQEDKQRVQEMIEARKFKPF

Nucleotide sequence

Length: 894

>Boschl.CG.Botznik2013.chr12.g11382.01.t
GATGAACATTAGGGTGCGAAAATTTCTGGCCCCAGTAAATTTGGCCAAGATTAGGGATTT
CGAGTCCGTCATGGAATATACTCAAGCCTGTCCATCTGGATATAGTAAAATTTTTGTGAA
ATACGACTCCTCGTGTAAATACAGTCATGAGCTGCTGTTTAAACCGGATGAAACAAGAAA
AGAAAATTCGCTGAAGCCCGCAGGAAGAACGTTACTAGTCGCCAACGTTCCACCATATTG
CAGCAAAACCAATCTTGAAAGGATCTTTTCAAAATTTGGAAAGGTTGATTCCGTACATCT
AGTTCACGCCCTGGGCGGTGAATCCGAGTATCACGCGAAGCCTCCTGTTGTCACCGACTT
GACTGACAATGACAGGAAATACTTTCCAAAGAAAGAAGAATACGGCTGTCCTTTTGCCTT
TATAGTCTACCAAGACAAATCATCTATTACTAAAGCTATGGGCCAAACGATCAAAGTAGC
TCCAACTCTTTTATCGCGAAATGAAGCGATCGGTATGAAGAAATGGGCACAAGAGTATTA
CAGCCAGTTCCCAAATCAAGATGAACTGAAAACTAACATCGACGCTTATATGGCGAGATA
CGATCGTGCGATACTACAGAGAGAGGAGCAAGAAAAACTTGCGGGCGAGGAGGACAATGA
CGGGTGGACAAAGGTGACAAAGGGCGGAAAGACTCCATTTATCGCAAGAACCGAGGCTAA
CCAGTTGAAAGCCAAAGAAAAGAGGAGGAATAGAAGCAGGGATTTGCTGAACTCGTATTC
CTACCAGATAAGGGAGTCGAAGCGACAAAAAATTGCAGAGCTTCGAGAAAAATTCCAGGA
AGACAAGCAAAGGGTGCAGGAAATGATAGAGGCGAGAAAATTCAAGCCATTTTA

InterProScan

PANTHER
RRP7 (IPR024326) - T[31-297] 5.8E-56
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[46-162] 1.6E-10
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[55-101] 4.5E-10 - T[136-154] 4.5E-10
ProSiteProfiles
RRM_dom (IPR000504) - T[69-159] 9.9
Pfam
RRM_dom (IPR000504) - T[71-103] 2.6E-5
Pfam
RRP7 (IPR024326) - T[171-297] 5.7E-32

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RRP7A_HUMAN 34.317 % 149 1.86E-43
RRP7B_HUMAN 47.619 % 79.7 8.51E-19