- Transcript 'Moocci.CG.ELv1_2.S54...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr12.g04704.01.t
Possible name(s)
RBPJ; RBPJL
Gene model
Location
chr12 [11,847,912 / 11,849,442]
Amino acid sequence
Length: 509
>Boschl.CG.Botznik2013.chr12.g04704.01.p
MEQRTEYHDGESPISSHIANHLPISHEDAVLEGRSELEPAGASGGRRLTFVEMPAAANKL
TRDAMRNYLSERKKDQTLVILHAKVAQKSYGTEKRFFCPPPCIYLYGEWHNNKPIEGSSE
DADGQIDIATSENQVHAFIGIGSNEQEMQQLRIEGRDFCNAKTLYISDTDKRKHFMLSVK
MFLSNGSEIGVFNSRRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLH
VSHGNFHASSVQWGSFAIHLLDDSESESEEFTVLDGYIHYGHTVKLVCSSTGMALPRLII
RKVDKQTAILNASDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMIND
GASWTIISTDEAEYTFSEGMGPTPNPVTPVPVVHSLQLNGGGEVAMLEVVGENFSPALAV
WFGDVEAETMYRCAEGLICVVPDISRFQEGWTYVKQSVKVPINLVRSDGIIYPTNLTFTY
TPEPGPRQQCSGIRTILHNNDLNSKERIN
Nucleotide sequence
Length: 1,530
>Boschl.CG.Botznik2013.chr12.g04704.01.t
AATGGAACAACGCACTGAATATCACGACGGCGAGTCGCCGATCTCATCTCACATTGCAAA
TCATCTTCCCATAAGCCACGAAGACGCGGTTTTGGAAGGAAGAAGCGAGTTGGAGCCCGC
CGGAGCGTCGGGAGGTAGGAGATTGACATTTGTCGAGATGCCAGCTGCTGCCAATAAATT
AACGAGAGACGCAATGAGGAATTACTTGAGCGAGAGAAAGAAAGATCAGACCCTAGTGAT
TTTACACGCTAAGGTGGCCCAAAAATCATATGGAACAGAGAAACGCTTTTTCTGCCCTCC
ACCGTGCATTTATTTGTACGGTGAATGGCACAATAATAAACCGATCGAGGGTAGCAGTGA
AGACGCAGATGGGCAAATTGATATTGCGACATCAGAAAATCAAGTTCACGCTTTTATCGG
AATAGGAAGTAATGAACAAGAGATGCAGCAACTGCGCATCGAAGGCCGTGATTTCTGTAA
TGCCAAAACCCTCTACATATCCGACACCGATAAAAGAAAACACTTCATGCTATCGGTGAA
GATGTTTTTAAGCAATGGATCTGAAATCGGCGTGTTTAATAGCCGCCGTATCAAAGTCAT
AAGCAAGCCTTCGAAAAAGAAGCAGTCTCTGAAAAACGCAGATCTCTGTATCGCGTCTGG
CACGAAGGTAGCGCTGTTTAACCGATTGCGTTCGCAAACCGTCAGCACCAGGTACCTACA
TGTGTCACACGGAAATTTTCACGCCAGCTCGGTTCAATGGGGGTCATTCGCGATTCATTT
GCTCGATGATTCCGAATCGGAATCTGAAGAATTCACCGTCCTTGACGGTTACATTCACTA
TGGGCACACGGTGAAGCTAGTATGCTCTTCAACCGGAATGGCGTTACCACGGCTGATAAT
ACGCAAAGTCGATAAGCAGACCGCGATACTGAATGCAAGCGACCCCGTATCGCAACTTCA
CAAATGTGCTTTTTACCTCAAAGACACGGAACGCATGTACCTGTGCCTCTCTCAGGAACG
GATCATTCAATTCCAAGCCACTCCTTGCCCCAAAGAGCCCAATAAAGAAATGATAAACGA
CGGGGCTTCGTGGACTATAATCAGCACCGACGAAGCAGAGTATACGTTTTCAGAAGGAAT
GGGACCTACTCCTAATCCCGTCACGCCAGTACCAGTCGTGCATAGCCTCCAGCTGAACGG
TGGCGGGGAGGTTGCTATGTTGGAAGTCGTGGGTGAAAATTTCTCTCCTGCGTTAGCAGT
GTGGTTTGGCGATGTTGAAGCGGAAACAATGTATCGCTGTGCTGAGGGGCTTATTTGCGT
TGTACCGGATATATCACGCTTCCAAGAAGGTTGGACTTACGTCAAGCAATCTGTGAAAGT
ACCGATTAATCTCGTGCGGTCTGACGGTATTATTTACCCCACAAATCTCACATTTACATA
CACGCCTGAACCCGGACCCCGACAACAATGTTCTGGCATAAGGACTATATTGCATAATAA
CGATCTTAATTCTAAAGAAAGGATCAACTG
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[59-214] 1.27E-54 |
| Gene3D |
RBP-J/Cbf11/Cbf12_DNA-bd_sf (IPR037095) - T[60-210] 8.6E-158 - T[369-389] 8.6E-158 |
| SMART |
RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[77-214] 4.4E-73 |
| Pfam |
RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[78-214] 4.9E-49 |
| SUPERFAMILY |
BTD_sf (IPR036358) - T[212-369] 1.06E-63 |
| Pfam |
Beta-trefoil_DNA-bd_dom (IPR015350) - T[215-364] 3.6E-71 |
| SMART |
Beta-trefoil_DNA-bd_dom (IPR015350) - T[215-364] 9.4E-88 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[370-482] 9.94E-37 |
| Gene3D |
Ig-like_fold (IPR013783) - T[391-484] 2.5E-39 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SUH_HUMAN | 76.327 % | 712 | 0 |
| RBPJL_HUMAN | 49.367 % | 466 | 9.22E-161 |