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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr10.g48063.01.t
Possible name(s)
MLH1; PMS1; PMS2
Gene model
Location
chr10 [8,336,404 / 8,338,837]
Amino acid sequence
Length: 810
>Boschl.CG.Botznik2013.chr10.g48063.01.p
MSXXKPINHSTVHQICSGQVILDLATAVKELLENAIDAGASVIEIRLKEYGMSSVEVSDN
GYGIEESNYEGLTMKHHTSKLQEFSDLTSVETFGFRGEALSSLCXLSNLVVTTRCKSXTV
GHKLEYDHQGKILKKSCVARQVGTSVLLKNIFVPLPVRHVEFVRNXKREFTKLLNLMYSY
CMVCXDVQISCTNEVKSVKREVFXTNNNNSTEDNIVSLFGSKIFKSLLQFKQTDPTIENC
ERYHINHSDCLEFSKDCGISGYISSCEAGRKSADMQFVSVNKRPCHVPKVTXLVNEVFRL
FNKSNFPFTQLDISIKRDDVDINVTPDKRQVFLTHEKAILXIIKSSLYELYXGRNHIIGT
LSSKGLIQSNLTWSLNPNTRSEECSTDLKENISHSKPLQLIDIPPNPQVDRSVTLQPTAL
CGIDCDXDVATSPSPTQLEDKSGIDLTDFGVGRLGKKLPTKVSPNRNSFXDFESTFSGTR
TIQLQSASSXLSSSIGKFISKTESTILNXGKLPLAELNRSNMQDRPDLSXAQVTNASDXN
SSCXETFDSADDICESRHKPCQQLAFSFENLEHXWNLKDKLRSRENEGSEVGGLFKAKIK
ASENNKAEKELSKHFEREDFRNMXVIGQFNLGFILVRFGKDLFIVDQHASDEKYNFEDLL
KHTKLKGQVLIVPQKLELTASDVMVLEENMETFVQNGFSFDIREXESGPKSVFLLKVPSS
KNTVFDASDVSELIFLLRXSPNVLCRPSRIRSMXASRACRKSIMVGTALTKEXMTRVVRH
MSEMDQPWNCPHGRPTMRHLIXMSMVLKPA
Nucleotide sequence
Length: 2,433
>Boschl.CG.Botznik2013.chr10.g48063.01.t
TGTCAGNAATNAAGCCTATAAATCACAGCACTGTGCACCAAATATGCTCCGGACAAGTCA
TCCTCGACCTTGCTACAGCCGTGAAAGAGTTGCTGGAAAATGCCATCGACGCGGGGGCAT
CTGTTATTGAAATCAGGTTGAAAGAATATGGAATGTCATCTGTCGAAGTTTCCGACAATG
GATATGGCATTGAGGAATCCAACTATGAAGGATTAACTATGAAACATCACACTTCGAAAT
TGCAAGAGTTTTCAGATTTAACATCGGTCGAAACGTTTGGGTTTAGAGGCGAAGCATTGA
GCTCGCTATGCGCNTTGAGCAATCTAGTGGTTACCACTCGTTGTAAGTCTNGCACAGTCG
GACATAAATTGGAGTATGATCACCAGGGCAAGATACTGAAGAAATCGTGTGTTGCAAGAC
AAGTAGGCACTTCTGTTCTGTTGAAAAATATTTTCGTGCCCTTACCTGTCCGGCATGTTG
AATTTGTGAGAAATNTCAAGCGCGAATTTACAAAATTGCTCAACCTCATGTATTCCTATT
GTATGGTATGCACNGACGTGCAAATATCATGCACTAATGAAGTGAAATCTGTTAAACGTG
AAGTTTTCAGNACTAATAATAATAACTCCACTGAAGATAATATTGTCTCACTCTTTGGGA
GCAAAATTTTCAAGTCTCTTCTTCAATTCAAACAGACAGACCCAACAATAGAAAACTGTG
AAAGATATCACATAAATCATTCCGACTGCTTGGAGTTCAGCAAAGACTGTGGGATCTCCG
GATATATTTCGTCATGCGAGGCAGGGCGCAAGTCGGCCGATATGCAGTTTGTATCTGTAA
ATAAACGCCCTTGCCATGTTCCGAAAGTCACAAANCTTGTAAATGAAGTATTCCGTTTAT
TTAACAAAAGCAATTTCCCTTTTACGCAGCTTGACATTTCTATCAAGCGTGATGACGTTG
ATATAAATGTTACTCCCGACAAAAGGCAGGTGTTTTTAACTCACGAAAAGGCCATCTTAG
NCATAATCAAGTCGTCTTTGTACGAGTTGTACNATGGCCGCAATCACATCATTGGAACGT
TGTCCTCAAAAGGACTGATACAGTCAAACCTGACATGGAGTTTGAATCCGAATACTAGAT
CTGAGGAATGTAGCACAGATCTCAAGGAAAATATATCTCATTCAAAGCCTCTACAATTAA
TTGATATTCCTCCCAATCCCCAAGTCGATCGTTCTGTTACACTGCAACCTACAGCGTTAT
GTGGCATTGATTGTGATNGTGATGTAGCAACATCACCGAGTCCAACTCAACTCGAGGACA
AGTCTGGGATTGATTTGACAGACTTTGGTGTTGGAAGACTTGGAAAGAAATTACCAACGA
AGGTTTCGCCCAATAGAAATTCTTTCTCNGACTTTGAAAGCACTTTTTCGGGAACTAGGA
CTATTCAATTACAAAGCGCAAGTTCACNTTTGTCTTCCTCAATCGGGAAATTTATTTCCA
AGACCGAATCAACTATTCTGAACTGNGGCAAACTGCCTCTGGCAGAATTGAATAGAAGTA
ATATGCAAGACAGGCCTGATTTATCTNTTGCACAAGTCACAAATGCTAGTGATTNGAATA
GCTCATGCNNTGAGACATTTGACTCTGCCGACGACATATGTGAATCGCGACATAAGCCAT
GTCAACAACTGGCATTTTCGTTTGAAAACTTGGAACACANTTGGAATTTGAAAGATAAAT
TAAGGTCTCGTGAGAATGAAGGTTCCGAAGTTGGTGGATTGTTCAAAGCCAAAATCAAGG
CGTCAGAAAATAACAAAGCGGAAAAAGAACTCAGCAAGCATTTCGAGCGTGAAGATTTTC
GAAACATGNAAGTAATCGGTCAATTCAATCTCGGTTTTATTTTAGTGAGATTCGGTAAGG
ACTTGTTCATTGTCGACCAACATGCCAGTGACGAAAAGTACAACTTTGAAGATTTACTCA
AACACACAAAGTTGAAGGGGCAGGTATTGATTGTGCCACAAAAATTGGAGTTGACTGCTA
GCGACGTAATGGTGCTGGAGGAAAATATGGAGACTTTTGTTCAGAACGGGTTTAGTTTCG
ATATTCGAGAGNCTGAATCTGGACCGAAATCGGTATTCCTTTTGAAAGTGCCGTCGAGTA
AGAACACAGTATTTGATGCGTCGGATGTGTCTGAGCTTATCTTCTTACTTCGTGANTCCC
CTAATGTCCTCTGTCGACCATCTCGGATTCGTAGTATGTTNGCTTCGCGTGCTTGTCGCA
AATCGATTATGGTCGGCACCGCTCTGACGAAAGAAACNATGACCCGTGTTGTGAGGCATA
TGTCCGAGATGGATCAACCTTGGAATTGCCCTCATGGTCGACCAACAATGCGACATCTGA
TAGANATGTCAATGGTTCTCAAACCTGCGTGAG
| Gene3D |
HATPase_C_sf (IPR036890) - T[2-219] 1.9E-68 |
| TIGRFAM |
DNA_mismatch_repair_fam (IPR002099) - T[5-331] 3.2E-85 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[18-205] 1.31E-46 |
| CDD |
HATPase_C (IPR003594) - T[24-97] 5.52936E-7 |
| ProSitePatterns |
DNA_mismatch_repair_CS (IPR014762) - T[94-100] . |
| SUPERFAMILY |
Ribosomal_S5_D2-typ_fold (IPR020568) - T[200-230] 1.29E-26 - T[257-351] 1.29E-26 |
| SMART |
DNA_mismatch_repair_C (IPR013507) - T[215-352] 4.6E-31 |
| Gene3D |
Ribosomal_S5_D2-typ_fold_subgr (IPR014721) - T[220-352] 1.0E-38 |
| Pfam |
DNA_mismatch_repair_C (IPR013507) - T[254-351] 6.7E-22 |
| SUPERFAMILY |
MutL_C_sf (IPR037198) - T[623-800] 3.4E-28 |
| SMART |
MutL_C (IPR014790) - T[625-769] 2.2E-35 |
| Pfam |
MutL_C (IPR014790) - T[625-769] 1.0E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PMS2_HUMAN | 50.568 % | 366 | 6.37E-114 |
| PM2P1_HUMAN | 48.402 % | 202 | 2.75E-57 |
| PM2P2_HUMAN | 52.459 % | 195 | 2.4E-56 |