Aniseed - Transcript Card

Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr10.g01896.01.t

Possible name(s)

AC009690.3; CELF3; CELF6

Gene model

Boschl.CG.Botznik2013.chr10.g01896

Location

chr10 [13,519,358 / 13,523,628]

Sequences

Amino acid sequence

Length: 281

>Boschl.CG.Botznik2013.chr10.g01896.01.p
MNQIANSYGPVALQLSPYGSAIPQMAHHQLIAAAPNVIPTAGWSPVTALAATTPTLAHLT
PGSAVMQTGTEEWCITGPQQITSIPSTPQSPATPITTLSLVPPQVLDQGSPFSSAQEAMY
PLQACPAPTPPTIEMVQAPAYQQQPYTVVYMPSGQYAQIPTQPLTQSQLTSLSPAQAAPA
AVGNPTAPQKEGPEGCNLFIYHLPAEFQDQDLANAFQRFGTVISAKVFIDRATSQSKCFG
FVSFDNSGSAQAAIQGMNGYQIGPKRLKVQLKRPKEQSRPY

Nucleotide sequence

Length: 846

>Boschl.CG.Botznik2013.chr10.g01896.01.t
GATGAACCAAATCGCCAACAGCTACGGCCCGGTCGCCCTGCAGCTTTCTCCGTACGGCTC
CGCCATTCCACAGATGGCGCACCATCAACTGATAGCTGCGGCTCCCAACGTTATTCCAAC
AGCGGGTTGGTCGCCAGTGACAGCGCTGGCTGCTACTACACCAACACTGGCGCACTTAAC
GCCGGGATCAGCGGTCATGCAGACAGGAACGGAAGAATGGTGTATTACAGGCCCCCAGCA
GATCACCAGCATACCGAGCACGCCACAAAGTCCAGCGACACCCATCACCACTTTAAGCCT
GGTTCCACCGCAAGTTCTAGACCAAGGCTCTCCGTTTTCCAGCGCACAGGAAGCCATGTA
CCCTTTACAGGCGTGCCCAGCTCCGACCCCGCCGACTATAGAAATGGTCCAGGCCCCAGC
CTACCAACAGCAACCTTACACAGTCGTGTACATGCCGTCTGGTCAGTACGCTCAAATCCC
GACCCAACCTCTCACACAATCACAGCTCACATCACTGTCTCCAGCCCAAGCCGCACCGGC
AGCAGTCGGAAATCCCACAGCACCACAGAAAGAAGGTCCTGAAGGATGTAATTTGTTTAT
CTATCATTTGCCGGCCGAGTTTCAAGATCAGGACTTGGCCAACGCGTTTCAGCGCTTCGG
CACTGTCATTTCCGCGAAAGTATTTATTGATAGAGCCACCAGCCAGAGCAAGTGCTTCGG
CTTTGTTAGCTTCGACAACAGCGGCAGCGCACAGGCCGCCATCCAGGGTATGAACGGCTA
TCAAATCGGCCCCAAGAGACTCAAGGTACAGCTGAAAAGACCCAAGGAACAAAGCAGACC
TTACTA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[157-273] 1.9E-28
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[178-279] 1.75E-27
ProSiteProfiles	RRM_dom (IPR000504) - T[196-274] 17.114
SMART	RRM_dom (IPR000504) - T[197-270] 2.1E-22
Pfam	RRM_dom (IPR000504) - T[198-267] 6.2E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CELF6_HUMAN	75.269 %	154	1.47E-43
CELF5_HUMAN	73.913 %	151	1.54E-42
CELF3_HUMAN	73.913 %	154	1.23E-43