- Transcript 'NCBI:KH.XM_018817092...'
Transcript Model
Transcript Id
NCBI:KH.XM_018817092.1
Possible name(s)
PRDM1; ZNF285; ZNF683
Gene model
Location
KhS600 [3,765 / 6,274]
Amino acid sequence
Length: 419
>KH.XP_018672637.1
MDHRTDNIGALDLSVPKQRSGQNEEMKNNVLDLSHKANGSTTSKIEHRTHDAGIVRHQGS
SLAGRPVPSMSHSMDYYTAAPNSLYPYLLRSWYYGCMQRWNKQKSQPCLTGPDIAGRSNQ
NNTERSQSLHERLKLSTARTDAAVKGKDLKRGGHCNNEFDLRDGFETNKNNAEDPHCSSQ
LSKNEQSGYRSLPYPLRKENGKIVYECNVCFKRFGQLSNLKVHLRVHTGERPFKCATCSK
GFTQLAHLQKHNLVHTGEKPHECNVCNKRFSSTSNLKTHMRLHNSAIKEPIHRGDYPVTC
KVGNINSNQPDLPKSSFQTGYDTHRHLMTYDPKNHITYQRQFNRKPYSQHIYPGMQEKPR
PTSVNLHDQEQHSSAYNANNVACSSQDINDNTLTDDSEISLKRCPPVPIFIRNNISKAN
Nucleotide sequence
Length: 1,407
>NCBI:KH.XM_018817092.1
TACTCCTTTAGGCAACCTAATAATGAATTTGAGGGTTTCTCATTGAAAATACTGGGTTAA
AGTGGCGGTATAGATGTACTAAGGTGTATGGATCATCGTACCGACAACATTGGGGCGCTG
GATCTAAGCGTTCCTAAGCAGAGAAGCGGTCAGAATGAAGAGATGAAAAATAATGTGCTC
GATTTATCCCATAAAGCTAATGGAAGCACTACAAGCAAAATAGAGCATCGAACCCACGAT
GCGGGTATAGTAAGACATCAAGGATCTTCACTGGCGGGTAGGCCGGTTCCAAGCATGTCC
CATAGCATGGATTATTACACGGCTGCACCGAACTCACTTTATCCGTACCTTCTGCGGTCT
TGGTATTACGGATGCATGCAGCGGTGGAACAAGCAGAAGAGTCAGCCGTGTCTTACTGGC
CCTGATATTGCGGGACGCAGCAATCAAAACAACACCGAAAGAAGCCAAAGTTTACATGAA
CGGTTGAAACTAAGCACGGCTAGAACAGACGCAGCTGTAAAAGGTAAGGACCTAAAACGG
GGAGGCCATTGTAACAACGAGTTCGATCTTCGAGATGGTTTTGAAACTAATAAAAACAAC
GCAGAAGACCCGCATTGCAGTTCACAACTTAGCAAAAACGAGCAATCGGGCTACAGGTCA
TTGCCCTACCCTCTTAGGAAAGAAAACGGGAAGATTGTGTACGAGTGTAATGTTTGTTTT
AAACGATTCGGACAGCTGTCCAATCTAAAGGTTCATCTACGAGTTCACACCGGCGAGCGT
CCGTTCAAATGCGCTACTTGTTCAAAAGGCTTCACACAGTTGGCTCATCTACAGAAACAC
AACCTCGTACACACTGGTGAAAAACCACACGAATGTAATGTCTGTAACAAACGCTTCAGC
TCGACGAGTAATCTCAAAACTCACATGAGACTCCACAACAGTGCTATAAAAGAACCAATA
CACCGAGGAGACTATCCTGTCACTTGCAAGGTCGGAAACATAAATTCAAACCAACCCGAT
CTCCCCAAAAGTTCGTTTCAAACTGGGTATGACACCCACCGGCATCTGATGACGTATGAT
CCCAAAAACCATATAACATACCAACGCCAGTTTAACCGCAAACCGTATTCACAACACATA
TACCCTGGTATGCAAGAGAAGCCGCGTCCAACCAGTGTTAATCTACACGACCAAGAACAA
CATAGCAGCGCTTATAATGCAAATAACGTCGCTTGTTCAAGTCAAGACATTAATGATAAC
ACTCTCACTGACGATAGCGAAATATCCCTAAAACGGTGTCCGCCGGTGCCCATTTTTATT
CGTAACAACATTTCAAAAGCTAATTGACAGTAAGTAAACGTTGTTGTATTTGCGTCTTGT
TCCATATTTCGTATCAATAAAGCAAAA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[193-242] 1.67E-13 - T[231-283] 3.62E-17 |
| SMART |
Znf_C2H2_type (IPR013087) - T[205-227] 0.0026 - T[233-255] 0.086 - T[261-283] 2.5E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[205-232] 16.124 - T[233-260] 15.687 - T[261-297] 12.653 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[207-227] . - T[235-255] . - T[263-283] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRDM1_HUMAN | 73.333 % | 188 | 1.21E-52 |
| ZN683_HUMAN | 62.602 % | 164 | 1.94E-45 |
| ZN285_HUMAN | 32.11 % | 105 | 1.27E-24 |
