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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C2.1024.v1...' > 
  2. Molecular Tool 'Prdm1-r.a mRNA (Ikeda 2017)' > 
  3. Molecular Tool 'Ephrin-Ad-MO (Hitoyoshi's MO)' > 
  4. Transcript 'NCBI:KH.XM_018814233...'

Transcript Model

Transcript Id

NCBI:KH.XM_018814233.1

Possible name(s)

KLHL12; KLHL17; KLHL20

Gene model

NCBI:KH.104266341

Location

KhC12 [3,044,701 / 3,048,646]

Sequences

Amino acid sequence

Length: 295

>KH.XP_018669778.1
MKSEEVVYECLVVWVKHDLHTRKLYFPTLFKHLRLQYVGVDYLSKNIRKEELVREFLDCR
DLVEDAFYFHIKPDMFEKQKQRKQCYPCKDIIFVPNGQQNIACFNVSEQEWSSLKVKGVY
HNYAMFIVHDEMVYCFGYINENSFNFGSNISKRFNGIEWENLAPMINCHYEAAVASIQGR
IFVFGGLLIEAQSNVACATNRISKYNPTNNTWTDVGHTKTLLSKAAAVGVGNVAYICGGH
EQANGGQRNLCASYIKVNRRPRKKETDAYSRGGYEHAMAVQRNLPTGSLVSNIPM

Nucleotide sequence

Length: 1,515

>NCBI:KH.XM_018814233.1
ATTTGAACAAGAAAAATAATTTTATAATTTTATATTGCGTAACATATCTGCAGTCTACAA
GATGTCTTCTTCAAAGCATCTAAGTTCTGATGGACATTTTGACTTCCTTATGAAAATGCT
TGTAAAGCAACGAAACAGTAGAGATTATTGTGATGTCACATTGGTAGCAGAAGGTCAAAC
ATTTCCAGCACATCGAGCAATTTTAGCAGCAAGCAGCAAATATTTCCACACTATGTTTAA
AAGTCAGATGAAAGAAAGATTTGAAAAAGAGATCACAATAAAAGAAGTGACAAAGATTGC
AATGAAACAAGTGATCAACTTTATTTATACGAACAAAGTTTTATTGTCAGAGGAAAATAT
TGATGAAGTTTTGCATGCAGCTTCACTGATGCAAGTACAAGATCTACTTGCATTAGTTAT
CCAATATCTCTCGAATAAAATATCTCCATTGAATTGTTTGCATTACCGTCAACTTATTAA
GTTGTATTCTCTCAATGATCTTGTATCGGAATGTGATCGATGCATTCATAATAATTTCGA
TCAAGTTTCATCTAAAGAAGAGTTGTTGGGCATTGATGAAGTTGAAATGGAGAAATTGAT
TTCTTCTGATGAATTGGTGGTAAGACAATGAAGTCAGAGGAAGTTGTTTATGAGTGTTTG
GTTGTTTGGGTGAAACATGATCTGCATACAAGGAAACTATATTTCCCAACTTTGTTCAAA
CATCTACGATTGCAATATGTGGGAGTTGATTACTTATCCAAGAATATCAGAAAAGAGGAA
CTTGTTCGTGAATTTCTTGATTGCAGAGATTTGGTTGAAGATGCTTTTTATTTTCATATC
AAACCAGATATGTTTGAGAAACAGAAACAAAGAAAACAGTGTTACCCGTGCAAAGATATC
ATATTTGTTCCAAACGGGCAACAAAATATAGCATGCTTCAATGTGAGTGAACAAGAATGG
TCATCACTAAAAGTTAAAGGTGTATATCACAACTATGCTATGTTTATTGTTCATGATGAG
ATGGTGTATTGCTTTGGTTACATCAATGAAAATAGTTTTAATTTTGGAAGCAATATTTCA
AAACGCTTCAATGGCATTGAATGGGAAAACCTTGCACCGATGATAAACTGCCATTATGAA
GCAGCTGTTGCTTCAATACAAGGGAGAATATTTGTGTTTGGTGGCCTTTTAATAGAAGCT
CAAAGTAATGTGGCCTGCGCTACAAACCGCATCTCTAAATACAATCCTACCAACAACACT
TGGACAGACGTTGGACACACTAAAACTTTACTAAGCAAAGCAGCTGCGGTTGGTGTTGGA
AATGTTGCGTATATTTGTGGCGGTCATGAACAGGCAAACGGTGGACAAAGAAACCTTTGT
GCCAGTTATATAAAGGTAAACCGTAGACCAAGAAAAAAAGAAACAGATGCGTATTCTCGT
GGTGGATATGAACATGCAATGGCTGTACAAAGAAACTTACCAACAGGTTCGCTTGTTAGT
AACATACCAATGTAA

InterProScan

Pfam
BACK (IPR011705) - T[2-47] 5.5E-7
Gene3D
Kelch-typ_b-propeller (IPR015915) - T[77-254] 8.8E-20
SUPERFAMILY
Kelch-typ_b-propeller (IPR015915) - T[96-246] 2.35E-18
Pfam
Kelch_1 (IPR006652) - T[171-215] 8.6E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
KLH12_HUMAN 25 % 85.1 1.68E-18
KLH20_HUMAN 23.228 % 88.6 1.06E-19
KLH29_HUMAN 22.742 % 82 1.95E-17