- Transcript 'Boleac.CG.SB_v3.S118...' >
- Clone 'AHC0AAA193YF17' >
- Clone 'AHC0AAA59YF05' >
- Clone 'cicl031l07' >
- Transcript 'KH2012:KH.S437.3.v3....'
Transcript Model
Transcript Id
KH2012:KH.S437.3.v3.A.nonSL19-1
Possible name(s)
ZKSCAN8; ZNF570; ZNF79
Gene model
Location
KhS437 [12,363 / 14,457]
Amino acid sequence
Length: 404
>KH.S437.3.v3.A.nonSL19-1
FTFTRLKMADDEATPSVQDLEETLVMIGDKATTIVIDVNDGSYDDDQIFLEEVLQDDDGG
EIKLEGVSFEEAFKQHGRLTSVKMKQCFICSLAFESHARFVQHVKEVHPVKFRDGKFHCP
VCNYSNKTKPSVEQHLRVHTKEKPFQCQICGKAFNQKAGVVQHMRTHSDEKPYICGICDG
RFKAHGTLLAHIAMKHQNIKPYTCKECGYSFGHASNLRTHMRTHTGERPYKCNFCEKTFV
QHGHCVTHQRLHTGEKPFKCDYCHGAFTHVGNLRQHVISQHTKDYKHRCQYCNKGFIGPG
DLRRHILTHSVVPVSMVTNMEEQMMQEIGEKEEQSVEHLEHGLEHVEQAGQVGPVGQVGQ
VRHNVGHDMDPNIEEIIHEQSGPDSPELEIVQVGGTDLVEAETS
Nucleotide sequence
Length: 1,460
>KH2012:KH.S437.3.v3.A.nonSL19-1
GATCCTAAAAGTGTTTTAGTTTACGTTTACAAGATTGAAAATGGCTGATGATGAAGCGAC
ACCGAGTGTTCAAGATTTGGAGGAAACTTTGGTAATGATCGGCGACAAAGCAACGACGAT
TGTGATTGATGTTAATGACGGCAGTTACGACGATGACCAAATATTCCTTGAGGAAGTTTT
ACAAGATGATGATGGAGGGGAGATCAAGTTGGAGGGGGTCAGTTTCGAGGAAGCGTTCAA
ACAACATGGACGACTCACCTCGGTAAAGATGAAACAATGTTTTATTTGTTCGCTCGCGTT
CGAATCCCATGCAAGGTTTGTTCAACACGTGAAGGAGGTTCATCCCGTCAAGTTTAGAGA
TGGAAAGTTTCATTGCCCAGTTTGTAATTATTCAAATAAAACGAAACCATCAGTCGAACA
ACATCTGAGGGTTCATACGAAAGAGAAACCGTTTCAATGCCAAATTTGCGGGAAAGCTTT
CAATCAAAAGGCTGGTGTTGTGCAGCATATGCGAACACACTCTGATGAGAAACCTTATAT
TTGTGGGATTTGCGATGGTAGATTCAAAGCACACGGCACACTTCTTGCACACATTGCTAT
GAAACACCAGAATATTAAACCTTACACTTGCAAGGAGTGCGGATATTCATTCGGGCACGC
AAGTAACCTGCGTACACACATGCGAACCCACACAGGTGAACGGCCATATAAATGTAACTT
CTGTGAGAAAACCTTCGTACAACACGGTCACTGTGTCACCCACCAACGGCTCCACACTGG
CGAGAAGCCGTTCAAGTGTGACTATTGTCACGGTGCGTTCACGCACGTCGGAAATCTACG
GCAACATGTGATCAGCCAACACACCAAGGATTATAAACATAGATGTCAATACTGCAACAA
AGGGTTCATTGGACCAGGGGATCTGAGACGGCATATTCTCACACACTCCGTTGTCCCGGT
TTCCATGGTTACCAACATGGAGGAACAGATGATGCAGGAGATTGGTGAGAAGGAGGAGCA
AAGTGTGGAGCATCTGGAGCATGGTTTGGAACATGTAGAGCAGGCGGGGCAAGTTGGGCC
AGTCGGGCAAGTTGGGCAGGTTAGGCATAATGTGGGCCACGACATGGATCCGAACATTGA
AGAAATCATCCACGAGCAGAGCGGACCCGACAGTCCCGAGCTGGAGATTGTTCAAGTTGG
TGGGACTGACTTGGTAGAAGCTGAGACTTCATAAGGAAAAAAGACGTCGTGTTGATTCAA
AGCAAACATATTGTTTGGATTGTGACATTGCTCATTCTAGACTTCCCAACATCATTGTTT
GATTGTGATGTAACAATGGCAGGGAATATTGGGTTCAAACTCTGAAATTAATAATGTCAT
ATTTTGCATGCGTGTTTGTTGTTTAACGAGCGTTTGGTTTAAGTTTTAGTGAATATTATT
CCCATCTTGTTTTGTGTTAG
| SMART |
Znf_C2H2_type (IPR013087) - T[85-108] 0.91 - T[117-139] 0.0028 - T[145-167] 1.1E-4 - T[173-196] 0.39 - T[202-224] 1.6E-5 - T[230-252] 0.27 - T[258-281] 0.019 - T[287-309] 0.0011 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[87-108] . - T[147-167] . - T[204-224] . - T[232-252] . - T[260-281] . - T[289-309] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[116-148] 3.35E-6 - T[139-191] 3.64E-17 - T[210-267] 3.59E-20 - T[256-309] 6.97E-11 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[117-144] 12.071 - T[145-172] 16.041 - T[173-201] 9.785 - T[202-229] 17.558 - T[230-257] 15.396 - T[258-286] 10.263 - T[287-310] 9.847 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZKSC8_HUMAN | 40.323 % | 178 | 2.03E-50 |
| ZN570_HUMAN | 35.314 % | 172 | 2.48E-48 |
| ZNF79_HUMAN | 36.429 % | 167 | 5.6E-47 |