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TRANSCRIPT CARD

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  1. Region 'REG00000765'
  2. Transcript 'KH2012:KH.C2.374.v1....'
  3. Transcript 'KH2012:KH.C8.163.v4....'
  4. Transcript 'KH2012:KH.C1.1061.v1...'
  5. Transcript 'KH2012:KH.L6.4.v1.A....'

Transcript Model

Transcript Id

KH2012:KH.L6.4.v1.A.ND1-1

Possible name(s)

HSD17B4; HSD17B8

Gene model

KH2012:KH.L6.4

Location

KhL6 [35,493 / 43,136]

Sequences

Amino acid sequence

Length: 752

>KH.L6.4.v1.A.ND1-1
HGIFVSFAASLLFSVIVSGSFCSLRGNMSELRFDGKVVLITGAGAGLGKCYALEFAKRGA
SVVVNDLGSTPGGVGSSAKVADQVVDEIRKLGGTAVANYDSVEFGEKLVNTALQNFGRIG
AYTMYIVINNAGILRDRSFMRMSDDEWDLVNKIHLRGSYSVTKAAWNHMKTQNYGRIIMT
SSASGLYGNYGQSNYSAAKMGLIGFANTLKLEGKKYNISVNTIAPNALTRLTEGLIPPEV
GKDLKIEYIMPLVIYLCHESCLETGGVFEVSGGHVCKLRWERTKGAVLREEGKPMLPEDI
KKNWEQVVDFSEREVLETIGDSVMAGVSAVQRVQAGDNDLGSSHPIKPKLAKQHKFAPVT
TYHDHNKVILYALGVGASTKQKDHLKFLFEMNEDFSVLPSFGVIPAFSSMLIADVKGLEF
NMTQILHGEQYLELYKPIPTEGKLTSQATIVDVLDKGSGAAIIMDVVTKDESGEKVFYNQ
FVTFVVGAGGFNGKRSSEHLKAVAKHPNRQPDSFIEQQTSNDQAALYRLSGDNNPLHIDP
SFAAMGGFKQPILHGLCSFGFSTRHVMEKYAGNDPTKIKAIKVRFAKPVIPGQTLRTEMW
KEGNRIHFQTIVAETGKPSLSGAYIDLTEAIVDEPKAVAGSLLSDALFEAAADRLTPDVI
RKVNASFQWNITKNGKVVKSWDMNLTKDAGYIKQGEASKPGCTVTVSDDDVMAIFSGSLN
PQQAFFKGQMKVSGNIMLAQKLEVIFKSQAKL

Nucleotide sequence

Length: 2,574

>KH2012:KH.L6.4.v1.A.ND1-1
ACACGGTATATTTGTTTCATTCGCAGCTTCGTTGCTCTTTTCTGTCATTGTTTCTGGAAG
TTTTTGCTCTCTCAGAGGAAATATGAGTGAACTAAGGTTCGATGGTAAAGTGGTCTTGAT
CACAGGCGCTGGTGCAGGTCTCGGAAAATGCTATGCGCTGGAATTCGCAAAAAGAGGAGC
ATCTGTTGTTGTCAACGATCTTGGTTCAACACCGGGTGGGGTAGGGAGCTCAGCAAAAGT
GGCCGACCAAGTGGTGGACGAGATTCGAAAACTCGGTGGAACGGCTGTTGCTAATTATGA
TTCTGTTGAATTTGGTGAGAAGCTTGTTAACACTGCTCTGCAAAACTTTGGCCGTATAGG
TGCGTACACCATGTACATTGTCATCAACAATGCAGGTATCCTCCGAGATCGCTCCTTCAT
GAGGATGAGTGATGATGAGTGGGATTTAGTAAACAAGATCCACCTCCGAGGAAGTTACTC
CGTCACCAAAGCTGCTTGGAATCATATGAAGACACAGAACTACGGACGCATCATTATGAC
ATCATCAGCATCGGGACTTTATGGGAACTATGGACAATCCAACTACAGCGCTGCTAAAAT
GGGTTTAATCGGTTTTGCAAACACTCTTAAATTGGAAGGCAAGAAATACAACATCAGTGT
TAACACTATTGCTCCAAATGCTCTGACCAGACTGACTGAAGGACTCATTCCACCAGAGGT
TGGCAAAGATTTGAAAATTGAGTACATCATGCCTCTAGTGATCTATCTTTGCCATGAATC
ATGCTTGGAAACAGGTGGTGTGTTTGAGGTGTCTGGAGGACATGTTTGCAAACTTAGATG
GGAGAGGACAAAGGGAGCAGTCCTTAGAGAGGAGGGAAAACCAATGCTCCCGGAGGACAT
TAAGAAAAACTGGGAGCAGGTGGTGGATTTTTCAGAAAGGGAAGTTCTGGAGACGATCGG
TGACTCCGTCATGGCGGGTGTCAGCGCCGTGCAACGTGTGCAGGCCGGCGACAATGACCT
TGGTTCATCTCATCCAATCAAACCAAAGCTTGCCAAACAGCATAAGTTTGCACCGGTCAC
TACTTATCATGATCATAACAAGGTTATTCTATATGCTCTCGGAGTGGGAGCATCTACAAA
GCAGAAAGATCATCTAAAGTTTCTCTTTGAAATGAACGAGGATTTCTCTGTTCTTCCTTC
ATTTGGCGTCATCCCTGCTTTTAGTTCAATGCTCATTGCAGATGTGAAAGGACTTGAATT
CAATATGACCCAAATACTTCATGGTGAGCAATACCTGGAACTTTACAAACCAATCCCCAC
AGAAGGGAAACTTACAAGTCAAGCCACCATAGTTGATGTGTTGGATAAAGGATCTGGAGC
TGCAATTATAATGGATGTGGTAACTAAAGACGAAAGTGGTGAAAAGGTTTTTTACAACCA
GTTTGTTACTTTTGTGGTTGGAGCTGGTGGTTTCAATGGAAAGAGATCTTCAGAACATTT
AAAGGCAGTAGCGAAGCATCCAAACCGACAACCTGATTCCTTTATTGAGCAGCAGACAAG
CAACGATCAAGCTGCTTTGTACAGATTAAGTGGAGACAATAATCCATTACATATTGACCC
TTCCTTTGCTGCCATGGGTGGATTTAAACAACCTATACTTCATGGTTTATGTTCGTTTGG
TTTCTCCACTCGCCATGTTATGGAGAAATATGCAGGAAATGATCCAACCAAGATTAAAGC
TATCAAGGTTAGATTCGCAAAGCCAGTGATTCCTGGTCAAACCCTCCGTACTGAGATGTG
GAAGGAAGGAAACAGAATTCATTTCCAAACTATAGTTGCTGAAACTGGAAAACCAAGCTT
ATCTGGAGCTTACATTGATCTTACTGAAGCTATTGTGGATGAGCCCAAGGCTGTAGCTGG
TTCCCTGCTAAGTGATGCATTGTTTGAGGCAGCCGCTGATCGGCTTACACCTGATGTTAT
AAGGAAAGTGAATGCTTCTTTTCAATGGAATATTACTAAGAATGGAAAAGTGGTCAAGTC
ATGGGACATGAATTTGACCAAGGATGCTGGTTATATAAAGCAAGGAGAAGCAAGCAAACC
AGGATGCACAGTCACAGTATCAGATGATGATGTTATGGCTATATTTAGTGGCTCACTAAA
CCCACAACAGGCTTTCTTTAAAGGTCAAATGAAGGTGTCTGGTAACATTATGTTGGCACA
GAAGCTAGAAGTTATCTTCAAGTCGCAAGCGAAGCTTTGAAACAGATTTAGCTCGCAAAT
TTAATTAGTCCTATGCAATTCATTGTAGTTATATATAGTTGTGAAGTAATTGATATAACA
TTACCAGTTTATTATGAAGTAATTTATGTAACTTTAACAGTTTATGCTGTACTAACTAAA
TTTAACCAAATTCTAATTGTTGCTGTATTATCATGCGTTGGTGTGATTTAGTATTTCAAA
CTACTTTTAAATGCTATCGTGCTATCCATGTTTAATATTAATATAATTTGATGTGATAAC
CAATTGTGTCTTATCGAATGCTCCAAAATAAATATATCAATACCTGTCCCCAAA

InterProScan

SUPERFAMILY
NAD(P)-bd_dom_sf (IPR036291) - T[31-310] 2.1E-56
Pfam
SDR_fam (IPR002347) - T[36-227] 3.8E-36
PRINTS
SDR_fam (IPR002347) - T[37-54] 3.2E-17 - T[122-133] 3.2E-17 - T[122-133] 3.7E-5 - T[169-185] 3.2E-17 - T[175-183] 3.7E-5 - T[195-214] 3.2E-17 - T[195-214] 3.7E-5 - T[216-233] 3.2E-17
SUPERFAMILY
HotDog_dom_sf (IPR029069) - T[354-499] 5.03E-42 - T[506-624] 1.64E-31
Pfam
MaoC_dom (IPR002539) - T[505-620] 8.1E-36
Gene3D
SCP2_sterol-bd_dom_sf (IPR036527) - T[638-752] 3.8E-32
SUPERFAMILY
SCP2_sterol-bd_dom_sf (IPR036527) - T[640-747] 1.06E-25
Pfam
SCP2_sterol-bd_dom (IPR003033) - T[653-747] 1.7E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DHB8_HUMAN 28.996 % 95.1 1.02E-21
DHB4_HUMAN 53.171 % 798 0
SCP2D_HUMAN 43.158 % 82 3.32E-18