- Transcript 'Harore.CG.MTP2014.S1...' >
- Region 'REG00001427' >
- Transcript 'KH2012:KH.L20.1.v1.R...'
Transcript Model
Transcript Id
KH2012:KH.L20.1.v1.R.ND1-1
Possible name(s)
GATA4; GATA5; GATA6
Gene model
Location
KhL20 [318,046 / 328,849]
Amino acid sequence
Length: 647
>KH.L20.1.v1.R.ND1-1
KIIFQRMYMPNPAVGLSTNPGSHGEYPSLGGLKSSEEPAEKSAKFIPSSEVPYYYPYRST
DGEVPTATYSPPISDDVVAAGGNDGSMLFGCHNNGSPRSACDVTQQNLGAYNATASREAG
NDVESNPGSCERRTFSFESNEEEALDRNEKKVTCSTQYSDYPRTHDSYPSIMGSTPNFTA
LPVLPTSNSDYSRSDYVTARPPVYVPLPENPIYSTTQTQPLNPMKTGYSSQSYPSNPQYP
FGPTSYTQHPGDFAPNGGIPSNSPSLPNSYSYPTGLWAPAENPLNYPGVGYGMSMNPASY
MSGMPQYGEPRECVNCGAISATSWRRDASGHFLCSTCGACRSGSYMRAPVKSKGKLATCR
RQVCSNCSTTVTTLWRRSPDGNPVCNACGLYQKLHGVPRPRTMKKDSIQTRKRKPKGQGK
VKGQKQRKTSSADSGVSNDIETEKQHSAGNNVPESPQRYDYQTQSFASANDSAISGHNVL
SASLLDNSLVTSASTSERNTTSPFVESHPVIGVGSSPDSGIGNPRANTTAGSIGRGPEMR
SSPESGGFSPMGRFDPENPEVFEKKQDISGQYPGNYVTGDPKYYNARYTSLPAESFPENQ
GFDSESLAALYSNGSAASVSQNRHFRQYHPYARYPSHRSPYVKPEVI
Nucleotide sequence
Length: 2,736
>KH2012:KH.L20.1.v1.R.ND1-1
AGAAAATTTATTTTTTGCTTAAAATTCTATTTTTCTACTTCTTGAGTTTTATCTGAAAAA
TAATTTTCCAAAGAATGTATATGCCTAACCCCGCTGTGGGACTTTCCACTAATCCAGGCT
CCCATGGGGAATACCCAAGTTTAGGGGGTTTGAAGTCCAGTGAAGAACCCGCAGAAAAAT
CGGCCAAATTCATCCCATCAAGTGAGGTTCCCTACTACTACCCCTACCGTAGCACCGATG
GGGAAGTACCCACTGCTACTTACTCGCCCCCGATTTCCGATGACGTAGTGGCAGCCGGCG
GAAATGACGGAAGCATGCTGTTCGGTTGTCATAACAACGGGTCACCGAGATCCGCTTGTG
ACGTCACACAGCAAAACTTGGGCGCCTATAACGCTACGGCGTCACGAGAGGCCGGAAATG
ACGTGGAATCGAACCCGGGATCCTGCGAACGACGAACTTTCTCTTTCGAATCGAACGAAG
AGGAAGCGCTGGACCGGAACGAGAAAAAGGTCACGTGTTCGACCCAATACTCCGACTACC
CCAGGACCCATGACAGTTACCCCTCGATTATGGGAAGCACACCAAACTTCACAGCTTTAC
CCGTCCTACCCACCTCTAACTCAGATTACTCCCGGTCTGATTACGTCACAGCCCGACCCC
CAGTATACGTACCCTTACCAGAAAACCCAATCTATTCTACGACCCAAACCCAACCCCTTA
ACCCCATGAAAACGGGGTATTCATCACAAAGTTACCCCTCCAACCCCCAATACCCGTTCG
GACCCACCAGCTACACCCAACACCCAGGCGACTTCGCCCCGAACGGGGGAATTCCCTCTA
ATTCACCCAGCTTACCCAACAGCTACAGTTACCCCACAGGCCTATGGGCCCCAGCAGAAA
ACCCCCTAAATTACCCCGGTGTGGGTTATGGGATGTCAATGAACCCAGCGTCTTATATGA
GCGGAATGCCCCAATACGGTGAACCACGTGAGTGCGTGAACTGTGGCGCCATCTCGGCCA
CGTCGTGGCGCCGAGACGCCTCAGGACACTTTCTGTGCAGCACGTGTGGCGCGTGTAGGA
GTGGTAGCTATATGCGGGCACCTGTCAAGTCTAAAGGAAAACTGGCAACATGTAGACGAC
AAGTATGTTCCAACTGTAGCACAACCGTTACAACATTGTGGCGTAGAAGTCCGGACGGAA
ACCCGGTGTGTAACGCGTGTGGTCTCTACCAGAAGTTACACGGGGTTCCTCGACCAAGAA
CAATGAAGAAAGACAGTATCCAAACTCGTAAGCGGAAACCTAAAGGTCAGGGCAAAGTAA
AAGGTCAGAAACAACGAAAAACTTCGTCAGCGGACAGCGGCGTCTCGAACGACATCGAGA
CCGAAAAGCAACACTCTGCGGGAAACAACGTTCCCGAATCCCCGCAAAGATACGACTACC
AGACCCAAAGTTTCGCCTCCGCCAACGACAGCGCCATCTCCGGCCACAACGTTCTATCGG
CTTCGCTATTGGACAACAGCCTCGTGACGTCAGCCTCTACGTCAGAACGAAATACTACGT
CACCATTCGTTGAATCACACCCCGTTATCGGAGTGGGGTCTTCCCCAGACTCGGGAATTG
GGAATCCCCGCGCTAACACTACAGCCGGAAGCATCGGCCGTGGACCGGAAATGAGATCAT
CACCAGAATCTGGTGGTTTTAGCCCTATGGGAAGATTTGATCCTGAGAACCCGGAAGTGT
TCGAGAAGAAACAAGACATATCGGGCCAATACCCTGGTAATTATGTAACAGGCGACCCCA
AGTATTATAACGCGAGGTATACGTCACTTCCTGCCGAATCCTTCCCGGAAAACCAGGGTT
TTGATTCTGAAAGTTTAGCTGCTTTATATTCTAACGGTTCTGCTGCGTCAGTGTCCCAGA
ATCGTCACTTCCGGCAATACCACCCCTACGCTCGCTACCCTTCACACCGGTCCCCCTATG
TTAAACCTGAAGTGATATAATAATCCAATCGTGACGTCATTGGTTAACGGTACCCGGAAA
GCTGCTAGTCACGTGAATTAACACGTGACACCTCTGCACCAATCATCTGTCTGAACGTAA
CTGCCAAATTTTTGTCGCAAAAAAAAAACAAAACAAGTTTTCCAAAATTTACACAAAATT
GAATTTTTTTTTTACAAAATCTTGACACTATACGTCATCAAATAAAATGATGACTGCGCA
GGTTTCAAAATAAATGCTGCATCATGTTTTTAGGCCCATGATAACTTTTCTATTTTTTTC
AATTTTTTTTTCTGAAGTTTCGCTGTTTCTTTGCTTTTGTGTCAATTGTTTTTCGTGAAT
TAATCTTCACACTGATTCACTCGCATTGCTTCACCCGCAAATCCTTTACGTCTTGAGTGC
TTGTGAATTTCGCGTACAAAAACTTCAAAAATTCTTAGCGCACTTAAAAAAATATTTTTT
TTTGATAATTTTTTTAAAAATACTTTCTCTAATTCAATCTTCCCCTATTTAGGCAATGTA
TATAAGATTTCTATTAAAACTATCTTGTCTCTATGTGCACGCTCATGTCTTCACTTTGTT
TCTTGTTACGTCATCATACTCTCGATTTTAAAACGTTTATGACGTAATGCAGTGTTCAAG
TGCGTCATAATTCTGCAATTTTTTCGTCCCCGCCCAAAGAACCGTACTACTATATTGTAC
ATAACGCTCTATTGAAGAAATACAATCATGGTTTAA
| ProSiteProfiles |
Znf_GATA (IPR000679) - T[307-360] 15.775 - T[364-411] 26.218 |
| SMART |
Znf_GATA (IPR000679) - T[307-355] 5.6E-4 - T[358-408] 1.1E-22 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[308-355] 3.8E-9 - T[359-423] 6.5E-27 |
| PRINTS |
Znf_GATA (IPR000679) - T[360-377] 2.4E-8 - T[378-395] 2.4E-8 |
| Pfam |
Znf_GATA (IPR000679) - T[364-397] 2.0E-15 |
| ProSitePatterns |
Znf_GATA (IPR000679) - T[364-388] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GATA6_HUMAN | 56.41 % | 142 | 1.01E-35 |
| GATA4_HUMAN | 56.303 % | 145 | 8.29E-38 |
| GATA5_HUMAN | 58.824 % | 130 | 6.01E-33 |