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- Transcript 'KH2012:KH.C5.544.v1....' >
- Transcript 'KH2012:KH.L108.5.v1....'
Transcript Model
Transcript Id
KH2012:KH.L108.5.v1.A.SL3-1
Possible name(s)
LEMD3; RBM23; RBM39
Gene model
Location
KhL108 [188,896 / 190,391]
Amino acid sequence
Length: 467
>KH.L108.5.v1.A.SL3-1
IKMTDDIDVEAMLEAPFQKSSEKEAKKKSEKKSRKRSRSRSRSRSRRHRRSRSRSRSRDR
KRSSRGGKRSRSRERRRHRSRSPRRSPKRVSPPKPRSPSPPDRDARTIFCMQLAQRIRVR
DLEEFFSSVGKVREVKLIQDKHSKRSKGIAYVEFKDLESIPLALGLSGQKLLGVPIVVQP
TQSEKNKIAAAQLSLQKAALGPTKLYVGSLHENITEEMIKGIFSPFGRVEQVQIIKDDAG
ASRGYGFITFAEAECAKRALDQLNGFEIAGKPIKLNTVSYGTDMNAMQGLASGPSFLDND
AVERAGIDLGTTGRLQLMAKLAEGTGLEVPSAAQQALYLGQSMGLGLPQSAAGTTGAPPI
ATTCFQLSNMFDPLNETGSSWDKEIRDDVIEECQRHGAVYHVFVDKQSKGNVYVKCDSVS
AAANSVAALHGRYFAGNMITAAYVPVVNYHSLFPDAAYSTTPLKPGQ
Nucleotide sequence
Length: 1,495
>KH2012:KH.L108.5.v1.A.SL3-1
GCAGTTTGTAGATTCTGATTTGTTCCAGATAGGATTACAAGTGAAAAGTTGAACTCAATT
TTGACTTTTTCTCCTCAAAGCAGAGATATAGATAAAGATGACGGATGACATTGATGTAGA
AGCTATGCTGGAAGCTCCTTTCCAGAAGAGCAGTGAAAAAGAAGCGAAGAAAAAGAGCGA
GAAAAAGTCCCGAAAGCGAAGCAGGAGCCGATCAAGGAGTAGAAGCAGAAGACACAGAAG
ATCGAGGTCCAGATCAAGATCCAGGGATCGGAAGAGGAGCAGCAGAGGTGGGAAGCGGAG
CCGTTCTCGTGAGAGGAGAAGACATCGATCTAGATCGCCGAGAAGAAGTCCGAAGAGAGT
CTCGCCTCCCAAACCGAGATCACCAAGTCCTCCCGATCGAGATGCGAGGACCATATTCTG
CATGCAACTTGCTCAAAGGATTCGGGTCCGAGATTTAGAAGAGTTTTTCTCATCTGTTGG
GAAGGTTCGCGAAGTAAAACTTATCCAGGATAAACATTCAAAGAGGTCAAAAGGCATCGC
GTATGTTGAGTTCAAGGATCTCGAATCTATTCCATTAGCGCTTGGGCTAAGTGGGCAGAA
GTTACTTGGAGTTCCTATCGTAGTGCAACCAACACAATCAGAGAAAAATAAAATAGCAGC
TGCGCAGCTAAGTTTGCAGAAAGCAGCGCTTGGGCCCACAAAGCTATATGTTGGTTCATT
GCATGAAAACATCACAGAAGAAATGATCAAGGGGATTTTTTCGCCGTTTGGTCGAGTTGA
GCAAGTTCAAATTATAAAGGATGACGCTGGGGCGTCACGTGGATACGGTTTCATTACTTT
CGCTGAAGCTGAGTGTGCAAAACGTGCGCTTGACCAATTGAATGGATTTGAGATTGCTGG
CAAACCAATTAAGCTGAACACTGTTAGTTACGGAACTGATATGAATGCAATGCAAGGTTT
GGCTAGTGGGCCTTCATTCTTGGATAATGATGCTGTTGAAAGGGCTGGCATTGATCTTGG
TACAACAGGAAGGTTGCAGCTCATGGCGAAACTTGCTGAAGGAACTGGCTTAGAAGTTCC
GTCTGCTGCACAGCAAGCTTTGTATCTTGGCCAATCCATGGGTCTCGGCCTTCCACAAAG
TGCAGCAGGTACCACAGGTGCACCACCAATTGCTACAACATGCTTCCAGTTATCTAATAT
GTTCGATCCATTGAATGAAACTGGTTCCAGTTGGGATAAGGAGATACGTGACGACGTTAT
TGAGGAATGCCAACGTCATGGAGCAGTTTATCACGTTTTTGTGGACAAGCAATCAAAGGG
AAACGTTTATGTGAAATGTGATTCTGTATCTGCAGCAGCTAATTCAGTTGCAGCTCTGCA
TGGGAGATATTTTGCAGGGAATATGATAACTGCCGCGTATGTACCTGTAGTAAACTACCA
TTCCCTATTCCCTGATGCTGCTTATTCAACCACTCCATTAAAACCTGGGCAGTAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[12-191] 4.3E-23 - T[192-281] 1.8E-24 - T[357-467] 1.3E-29 |
| TIGRFAM |
RBM39_SF (IPR006509) - T[25-455] 6.4E-139 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[49-180] 9.54E-23 - T[202-290] 1.22E-29 - T[380-443] 1.22E-29 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[106-183] 14.743 - T[203-280] 19.809 |
| SMART |
RRM_dom (IPR000504) - T[107-179] 1.3E-14 - T[204-276] 3.1E-26 - T[364-442] 2.4 |
| Pfam |
RRM_dom (IPR000504) - T[108-173] 2.4E-11 - T[205-274] 2.6E-21 |
| Pfam |
RBM39_linker (IPR029123) - T[300-381] 2.6E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MAN1_HUMAN | 42.342 % | 102 | 3.74E-23 |
| RBM39_HUMAN | 50.844 % | 477 | 9.28E-166 |
| RBM23_HUMAN | 43.596 % | 315 | 1.29E-103 |