- Transcript 'KH2012:KH.C9.654.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.654.v1.A.SL1-1
Possible name(s)
DAW1; NLE1; WDR12
Gene model
Location
KhC9 [4,932,580 / 4,934,355]
Amino acid sequence
Length: 435
>KH.C9.654.v1.A.SL1-1
RARVISTMAHFQIKLFTQQKQFSVTDNTFSVPGSSTCTELNDLVNKLLSEDKDESTRSDF
DFLVNDEFIRTSLVDHVETKGLSSESVIDVEYLQRKQAPELKHSFQQPDWISSIKTTEKF
IITGSYDCAVTVWDRVTTKQLVSGIGHSEPVKSIAIINYNSDEKKQKISFVSTSQDQHAV
IWTYNSSTNQLSSLFCCKGHSKSVECAASNEKKSIFATGSWDSTIKVWSSSVTPEEDTQE
VINSSKKKFKSGKKSLTRTAKVTLSGHTEVVSALTWLNENEICSGSWDHTIRIWDIDTAV
EKSHMRGMKSILSLDYSHLSRLVVTGNTDRHVRLWDPRSGEGAVVKCNLTSHIGWVTSVH
WAPNDSHTLVSGSLDNCVKMWDTRSPKAPLYDLQAHTDKVMSVDWSLPDIVASGGADCKV
FTFTVNTGAVDNVYG
Nucleotide sequence
Length: 1,775
>KH2012:KH.C9.654.v1.A.SL1-1
TGCTTAAGTAGCCATAAGGTATCGTTTTAAACTTTGTGTTTAATCCAAACTGAAGAGCGA
GGGTTATCAGTACAATGGCTCACTTCCAAATTAAACTTTTCACACAACAAAAACAGTTTT
CAGTTACTGATAATACGTTTTCTGTACCTGGTAGCAGCACATGCACAGAATTGAATGATT
TAGTGAACAAACTTTTGTCAGAAGATAAGGATGAAAGCACCAGATCTGACTTCGACTTTC
TTGTTAACGATGAGTTTATAAGAACTTCATTGGTTGATCATGTTGAAACTAAAGGGTTGT
CCTCTGAATCTGTAATAGATGTGGAATATTTGCAACGTAAGCAAGCACCAGAGCTTAAAC
ATTCATTTCAACAACCAGATTGGATAAGCAGCATAAAAACAACTGAGAAATTTATTATAA
CTGGATCATATGACTGTGCGGTGACTGTTTGGGACAGAGTGACCACAAAACAGTTGGTTA
GTGGTATTGGCCATTCTGAACCTGTGAAGTCAATTGCAATAATCAACTATAATTCTGATG
AAAAAAAGCAAAAGATAAGTTTTGTTAGCACGTCACAAGACCAACATGCTGTTATTTGGA
CGTATAACTCATCAACTAATCAGTTGAGTTCATTGTTTTGTTGTAAAGGTCACTCAAAGA
GTGTAGAATGTGCTGCTAGCAATGAAAAGAAATCTATTTTTGCGACTGGCTCGTGGGATT
CTACAATAAAGGTTTGGTCATCCTCTGTTACACCAGAAGAAGACACACAAGAGGTCATCA
ATTCAAGCAAAAAGAAATTCAAAAGTGGGAAAAAAAGTCTGACTAGGACGGCGAAAGTAA
CACTGTCGGGCCATACAGAGGTTGTGTCGGCACTCACATGGTTGAATGAAAATGAAATTT
GTTCTGGATCTTGGGATCATACTATTCGAATCTGGGATATTGATACAGCAGTAGAGAAGT
CCCACATGCGAGGAATGAAGTCTATTTTATCGCTTGATTATTCCCATCTTAGTAGATTGG
TTGTGACGGGGAATACAGATCGCCATGTAAGGTTGTGGGATCCTAGGAGTGGTGAAGGGG
CCGTCGTGAAGTGTAATTTAACCTCACATATTGGCTGGGTGACTTCTGTTCACTGGGCCC
CTAATGATTCTCATACATTAGTGAGTGGATCATTGGACAACTGTGTTAAAATGTGGGACA
CAAGGAGTCCTAAGGCCCCATTATACGACCTGCAAGCACACACAGATAAAGTAATGTCTG
TTGATTGGTCTTTGCCGGACATTGTAGCCAGTGGAGGGGCTGACTGTAAAGTGTTTACTT
TTACAGTTAACACTGGTGCAGTGGATAATGTATACGGATGAAAGCTGCAAATCCATTATG
AGTAATAATTGCTATTTACGCAATGATTGTGGTTTCAATGCATCAATCTTGAACACTAAA
ACATACCCAAAATGTTTATGTTTTAAATAATTATAAACTTGACCAGAGTACCTGTTTATT
GAATAATATTCCTTACTATGTTTTTGATAAGGGCTATATTGGCATTTGCAGAAGATAACT
ATAATATAATCTTTATCGCAAAAGTTTGGTAAAAATATTGTTAAAATCTGTTTAACATCT
CTAAAAGTGTCGCTTTTTTGTTGGGGTTATATTTAGGATTACTATTTTAGGGTTACTAAT
AAGTTTCAACCAAAATGAGTAGTTTTATTTTAAAATCATCCAGATTTTTGCATTGTGTAT
AGGCGTATAGCATTTCACTCATTTTACTATTTCAG
| Hamap |
WDR12/Ytm1 (IPR028599) - T[5-427] 29.728 |
| Pfam |
NLE (IPR012972) - T[12-76] 1.1E-17 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[86-194] 1.4E-11 - T[195-244] 9.7E-6 - T[248-306] 2.6E-8 - T[307-434] 1.5E-29 |
| SMART |
WD40_repeat (IPR001680) - T[98-134] 0.63 - T[137-183] 5.4 - T[190-229] 5.0E-6 - T[257-295] 4.2E-7 - T[298-336] 0.016 - T[342-382] 3.2E-7 - T[386-424] 0.0095 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[104-433] 35.594 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[109-431] 8.24E-56 |
| Pfam |
WD40_repeat (IPR001680) - T[194-229] 3.8E-5 - T[263-295] 9.1E-6 - T[308-336] 0.0032 - T[349-382] 0.001 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[197-229] 11.377 - T[264-298] 12.58 - T[311-345] 10.308 - T[349-391] 13.416 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[216-230] 8.7E-8 - T[282-296] 8.7E-8 - T[369-383] 8.7E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[282-296] . - T[369-383] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NLE1_HUMAN | 25 % | 87.8 | 1.25E-18 |
| DAW1_HUMAN | 23.958 % | 93.6 | 9.76E-21 |
| WDR12_HUMAN | 43.645 % | 355 | 1.12E-119 |
