- Transcript 'Haaura.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C8.246.v2....'
Transcript Model
Transcript Id
KH2012:KH.C8.246.v2.A.SL2-2
Possible name(s)
CHERP; SF3A1; SUGP1
Gene model
Location
KhC8 [521,672 / 528,977]
Amino acid sequence
Length: 796
>KH.C8.246.v2.A.SL2-2
VKMDIPKPPDEPEVKNIIDKLANFVARNGVEFENMTKSKQRNNPKFSFLFGGEHYGYYQY
QLSTEQQIMNMQRMKMNTQQVVQDQMVKQSLQNAPWQQQQGGFSQYQGGSPQMPPRSSQP
PMNVPPWQQQQRPPYMPHNNMPNQPRHPTPSNPNQPTLMTPELGKLEEEINKEEEDVEKK
VKDSENNLKQQHEVLMNKQSEKIEQAVYDAQDNDRRNTARDVNISLDAMDEILQPIIDSC
TKDSISAGKTWILNNGVTEEKCQVVAKQLLWRILEAERKLKGKKVADASMFNIQLHIIYL
INDVLHHASRKNLTHLANSLESVIVPLFCTTQSCADPDNQSRLSKLLGLWNKFKYFNKDT
MHKLENYAEAVQEFKADMLDQYKDVVEKVKTLTHEQYEQYKKQHNEYEAHLRKQLQDKKN
RLHDQKQQHSSNTRNNRFSERSMDDNQPPHNGQRYPEKKPLLADPPWRPREQFNDNDYNY
DRRMDNDPGPRPRNPDMEFGMRGPPPDWHGEPRRDPNWDNHPDTWGNEGKMRGPNGPWNN
QGPPKPPVRPIEQDDPTLIPQAPYYDLPCGLMAPLVKLEDMEYKELDPSMIRLPPPIPPS
DRLMAAVEAFYSPPSHERPRNIDGWEHNGLFEFYRAKVRANRKAKEGYTRSRSKSRSRDR
SYSRSRSRSYSRSRSRSSSRSRSSSRSRSRSRSRDRERAPTPPSFGNTSFQQTNAEGRLG
EDNRGAQMMKRMGWGGAGLGSSEQGIQDPVKAGDTRDKYDQFKGLGNDMNDPYENYRKNR
SYGYISKIRARDEKGT
Nucleotide sequence
Length: 2,535
>KH2012:KH.C8.246.v2.A.SL2-2
TTGTAAGATTGTGTAACAAATTTTGAGTGAAAATGGACATTCCGAAACCCCCAGATGAGC
CTGAGGTGAAAAACATCATAGATAAACTCGCTAATTTTGTGGCAAGAAATGGAGTTGAAT
TTGAGAACATGACCAAATCTAAACAAAGGAATAATCCAAAGTTTAGCTTTCTATTTGGTG
GGGAGCATTATGGATATTATCAATATCAACTCTCTACTGAACAACAAATCATGAACATGC
AGCGTATGAAGATGAACACCCAGCAAGTTGTCCAGGACCAAATGGTCAAGCAATCACTTC
AGAACGCACCATGGCAGCAACAACAAGGAGGATTCTCCCAATACCAGGGAGGTTCACCAC
AGATGCCTCCAAGATCTTCACAACCACCAATGAATGTCCCACCATGGCAGCAACAACAAA
GGCCACCATACATGCCACACAACAACATGCCTAATCAACCCCGCCACCCTACCCCAAGTA
ACCCCAACCAACCAACACTCATGACCCCGGAACTTGGGAAACTTGAGGAAGAGATTAATA
AGGAAGAGGAAGATGTGGAGAAGAAAGTGAAAGACAGCGAGAATAATTTGAAACAACAAC
ATGAGGTGTTAATGAACAAACAAAGTGAAAAGATCGAGCAAGCTGTGTACGATGCGCAAG
ATAATGATCGTAGAAACACAGCAAGGGACGTTAACATCTCACTTGATGCTATGGATGAAA
TACTTCAACCTATAATTGATTCATGCACCAAAGACTCAATTTCAGCCGGTAAAACCTGGA
TTCTAAACAATGGTGTGACTGAAGAAAAATGTCAAGTTGTTGCAAAACAACTGCTGTGGA
GAATACTGGAAGCTGAAAGAAAATTAAAGGGTAAAAAGGTGGCTGATGCTTCTATGTTCA
ACATTCAACTTCATATTATTTATTTAATCAACGATGTATTACACCACGCTTCACGCAAGA
ACCTGACACATCTCGCAAATTCCTTGGAATCAGTTATTGTTCCTTTATTCTGCACAACAC
AGTCATGCGCTGATCCGGATAATCAGTCACGACTCAGCAAATTGCTTGGCTTGTGGAACA
AATTCAAATATTTCAATAAAGATACAATGCATAAGCTGGAAAACTATGCAGAAGCTGTGC
AAGAATTTAAGGCGGATATGTTGGACCAATACAAGGATGTAGTTGAAAAAGTAAAGACTT
TAACTCATGAACAATATGAACAATACAAGAAACAACATAATGAATATGAGGCTCATTTAA
GAAAACAACTACAAGATAAAAAGAATCGGCTGCATGATCAAAAACAACAACATTCATCAA
ATACAAGGAACAATCGTTTCAGTGAGAGGAGTATGGATGACAACCAACCTCCACATAATG
GTCAGCGATATCCTGAAAAGAAGCCACTGCTTGCTGATCCACCATGGAGACCAAGGGAGC
AATTTAATGACAATGATTATAATTATGACAGAAGAATGGATAATGATCCAGGTCCAAGAC
CAAGGAACCCGGACATGGAGTTTGGAATGAGGGGTCCACCACCTGACTGGCATGGAGAGC
CTCGACGAGACCCCAACTGGGATAACCACCCTGATACCTGGGGTAATGAGGGTAAAATGA
GAGGACCCAATGGACCTTGGAATAACCAGGGTCCTCCTAAACCTCCAGTTCGTCCAATAG
AGCAAGATGATCCAACTCTAATCCCCCAAGCTCCTTATTATGATCTACCATGTGGACTCA
TGGCTCCACTTGTTAAATTAGAAGACATGGAATACAAGGAGCTTGACCCATCAATGATCC
GTCTTCCCCCTCCTATTCCTCCCAGTGATAGGTTGATGGCAGCAGTTGAAGCTTTTTACA
GTCCTCCCTCCCATGAAAGACCAAGGAACATTGATGGTTGGGAACACAATGGATTATTTG
AATTTTACCGAGCAAAAGTACGAGCGAATCGGAAAGCAAAGGAAGGTTACACAAGGTCAC
GGTCAAAGTCAAGATCAAGAGATCGTTCGTATTCAAGGTCACGGTCACGCTCATATTCAC
GATCACGTTCAAGATCATCATCAAGATCCCGAAGCTCCTCACGGTCACGAAGCAGATCAA
GATCACGTGATCGTGAACGTGCACCAACTCCACCCAGTTTTGGCAATACCTCTTTCCAAC
AAACAAATGCTGAAGGTAGGTTGGGAGAAGATAACAGAGGAGCGCAGATGATGAAGAGGA
TGGGGTGGGGTGGTGCTGGACTCGGATCTTCGGAGCAAGGGATACAGGATCCTGTTAAAG
CTGGAGATACAAGAGATAAATATGATCAGTTCAAAGGCCTTGGTAATGATATGAATGATC
CTTATGAAAACTATCGTAAAAACAGAAGTTATGGTTACATTTCAAAAATACGAGCAAGAG
ATGAAAAAGGCACTTGAAGATTATCCGATTATACATGAGATATGTCCTTCACACTGAAAA
AGGAAAAAAATGTTCTGGTGCTTTTGTAATTCAGTTATTGAAGCAACCAAATAAATCATG
CCCCTGTTTCTATAA
| Gene3D |
SWAP/Surp_sf (IPR035967) - T[2-70] 2.2E-23 |
| SUPERFAMILY |
SWAP/Surp_sf (IPR035967) - T[6-66] 1.7E-18 |
| SMART |
Surp (IPR000061) - T[15-67] 3.0E-18 |
| Pfam |
Surp (IPR000061) - T[16-60] 2.4E-14 |
| ProSiteProfiles |
Surp (IPR000061) - T[17-59] 15.113 |
| ProSiteProfiles |
CID_dom (IPR006569) - T[221-372] 26.734 |
| Gene3D |
ENTH_VHS (IPR008942) - T[222-384] 7.3E-26 |
| SUPERFAMILY |
ENTH_VHS (IPR008942) - T[291-373] 7.19E-7 |
| Pfam |
RNA_pol_II-bd (IPR006903) - T[294-356] 1.7E-15 |
| SMART |
G_patch_dom (IPR000467) - T[719-768] 2.6E-12 |
| ProSiteProfiles |
G_patch_dom (IPR000467) - T[721-770] 13.587 |
| Pfam |
G_patch_dom (IPR000467) - T[722-767] 1.2E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHERP_HUMAN | 45.327 % | 145 | 8.96E-36 |