- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C3.383.v1....' >
- Transcript 'KH2012:KH.C3.383.v1....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C8.188.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.188.v1.A.ND1-1
Possible name(s)
ERBIN; LRRC9; LRWD1
Gene model
Location
KhC8 [3,779,593 / 3,781,951]
Amino acid sequence
Length: 663
>KH.C8.188.v1.A.ND1-1
MCELTSEEKYAAWKGSLDETFLLKITGVAKLDQIEDLRLCGLELCDDDLRPDVLNKLSSL
VELNLSGNRLTCIPEGIVLKKLQYLDISNNRVASVEWVKRFPGLIDLDIFGNIGLTVDDR
YKITFLLENLNRLDRKGLEESDKLRETFTKKLIVRINNLWKKEFADNIPDDSTEKDVLKL
QNEFVQRAKAKVHYGPNSLKGYRLWRIEAIAKELVLFKIECPGSNLLLEIVDDTSSSEEN
PAVKSEKKLTRKAKNRHTEETCGDVFSPFSFLQCHSKDNGSSDFSTQVWCCSFEPDIEEK
SKTTNLVATCGGDTVCITECTTAKVQMRFQQKNEEFYVVAWSTLNINKHKSNILVAAGCL
GFIHLLHPKQGLCYGRINAHSSPIQTVMFSPYCPTHLLTGDKKGNVYMIDIDVPTIPEYK
FSWKKLMRFVGIDATPLKFCIPPIGGYLLCASEYGLYCWKSNDIMKTFPRGRSSVIINDN
LSELRFPGTKMEESMVDALAMLTDDMLATKVSQQGCIFLWKFSDVEPKLKATKGNKVSVI
TVPVFKELKWSNTKQCFINMAACVPKCSIISGDEVGNIWIYNLSDALEETSSYKAKKSKA
IVPDKITEPSRIIPFPKCTNTSGDLLLKFKKGTIYNDISCNSDMTFIVVTADTNLVGIYK
KVE
Nucleotide sequence
Length: 2,228
>KH2012:KH.C8.188.v1.A.ND1-1
ATGTGTGAATTAACTAGTGAGGAGAAATACGCAGCGTGGAAGGGAAGTCTGGACGAAACT
TTTCTTCTGAAAATAACTGGTGTAGCAAAACTCGACCAAATAGAAGATTTGCGACTGTGT
GGGCTTGAATTATGCGACGATGATTTGCGACCTGACGTTTTGAACAAGCTATCGTCTCTA
GTTGAACTAAATTTGTCAGGAAATCGGTTAACATGCATACCGGAAGGTATTGTGTTAAAA
AAACTGCAATACCTGGATATTTCGAATAATCGAGTTGCTTCTGTGGAATGGGTAAAAAGG
TTTCCAGGTCTGATTGATCTTGATATATTTGGGAACATTGGCCTGACTGTAGACGATCGA
TATAAGATTACATTCCTGCTGGAAAATTTAAACCGCTTGGATCGAAAGGGTTTAGAAGAG
AGCGACAAATTACGAGAGACTTTCACAAAGAAGTTGATAGTTCGAATTAACAATCTTTGG
AAAAAAGAATTTGCCGACAATATTCCTGATGATTCAACTGAAAAAGATGTCTTGAAGTTG
CAGAACGAATTTGTACAGCGTGCCAAAGCAAAAGTACATTATGGACCTAATTCTCTAAAA
GGGTATCGCCTTTGGAGAATTGAAGCAATTGCAAAAGAACTTGTGTTGTTTAAAATTGAA
TGCCCTGGTAGTAATCTACTGCTGGAAATAGTAGATGATACATCAAGCTCTGAGGAAAAT
CCTGCAGTCAAATCTGAAAAGAAGCTAACTAGAAAAGCAAAGAATCGACATACTGAAGAA
ACTTGTGGAGATGTCTTTTCTCCTTTTTCATTTCTTCAGTGCCATAGTAAAGATAATGGT
TCAAGTGACTTTTCAACACAAGTGTGGTGCTGCTCATTTGAACCTGACATCGAAGAAAAA
TCTAAAACAACAAATCTTGTTGCAACGTGTGGCGGGGACACGGTATGCATCACTGAATGC
ACAACGGCGAAAGTGCAAATGCGATTTCAACAAAAAAATGAAGAATTCTACGTCGTCGCT
TGGTCTACATTAAATATAAATAAACACAAGAGTAATATTCTTGTGGCTGCTGGTTGCTTG
GGCTTTATTCATTTACTCCACCCTAAACAAGGCTTGTGTTATGGCCGCATTAATGCTCAT
TCATCTCCGATTCAAACAGTGATGTTCTCTCCATATTGCCCTACGCATTTGTTAACAGGG
GATAAAAAAGGAAACGTTTATATGATAGATATAGATGTCCCTACTATACCTGAATATAAA
TTCTCGTGGAAGAAGTTGATGCGATTTGTAGGGATTGATGCAACACCACTTAAATTCTGC
ATTCCCCCTATTGGTGGGTATCTTCTCTGTGCAAGCGAATATGGGTTGTATTGTTGGAAA
TCAAATGATATAATGAAAACGTTTCCAAGGGGCAGATCTTCTGTTATAATCAATGATAAT
CTATCTGAGCTAAGATTTCCAGGAACAAAAATGGAGGAATCAATGGTAGATGCCTTGGCA
ATGTTAACTGATGATATGCTTGCTACTAAGGTATCCCAACAAGGCTGTATCTTTCTCTGG
AAGTTCTCTGATGTTGAGCCTAAATTAAAAGCAACAAAAGGCAACAAAGTGAGCGTAATC
ACTGTACCAGTGTTTAAAGAATTAAAATGGTCCAACACAAAGCAATGCTTTATAAACATG
GCAGCTTGTGTGCCAAAATGTTCAATTATTTCCGGTGATGAAGTTGGTAATATCTGGATT
TATAATTTATCTGACGCCCTTGAAGAAACCTCTTCCTACAAAGCTAAGAAATCCAAAGCA
ATTGTCCCGGATAAAATAACAGAACCTTCCCGAATTATACCCTTTCCAAAATGCACCAAC
ACGAGTGGCGACTTGCTTTTAAAGTTTAAAAAGGGGACAATATATAATGATATTTCCTGT
AATTCCGACATGACCTTTATTGTGGTAACAGCCGACACAAATCTGGTTGGAATCTACAAA
AAAGTTGAATGACGCAATTGTGATATCATTATGTCATTTATGATATTTTATAATGTATGG
GTTCGCAATGTTCTTGTGTTTTAAGGTTTATTTGCAACAGTTTGTTGTTTTACTCGCATT
TTGTGCCTTTTTATCATGAATTTTATTTCGTTTTACAACATTCAGTTTTTAACAGTTTTT
TTTTTTTGTACCGTTTTTGTTTTTAGCAAGGTGTTTTTTTATTTCACTTCCTATTTCTTT
CTTCTTAG
| Gene3D |
LRR_dom_sf (IPR032675) - T[16-155] 2.3E-15 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[57-80] 0.0043 |
| Pfam |
Leu-rich_rpt_4 (IPR025875) - T[59-94] 1.2E-6 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[59-80] 8.497 - T[81-102] 6.803 |
| SMART |
WD40_repeat (IPR001680) - T[265-319] 77.0 - T[370-410] 0.013 - T[422-460] 230.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[286-659] 7.5E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRWD1_HUMAN | 30.723 % | 315 | 1.1E-98 |