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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C10.59.v1....'
  2. EST 'AHC0AAA232YO03_RM1'
  3. Molecular Tool 'FGF8/17/18-MO (Imai 2009)'
  4. Transcript 'KH2012:KH.C8.12.v1.A...'

Transcript Model

Transcript Id

KH2012:KH.C8.12.v1.A.nonSL1-1

Possible name(s)

TSEN2

Location

KhC8 [1,438,432 / 1,440,349]

Sequences

Amino acid sequence

Length: 336

>KH.C8.12.v1.A.nonSL1-1
SKFVGTSSYDYLPKEYRIYIKYMAIFRPPQKKKGASKEFFTPLPVPIASINKAVPKLELW
SYYDGHLKEDHIKVELKGDIHCLHTQGFFGRLVKTATQNDEPTEDEKSKLSIDCKGSDTS
TNHDSCLNKISGHSSTIPTQHKQHETALAAKVEEILVLTYEEAFFLSYGLGCLFVKDYNG
ENINIEQQWNIFCKRNMRFPVTYCAYHHFRSKGWVPRDGIRYGGDLVLYRKGPPYYHASY
IVIIVSVDAETLQETVFREAKNRTFSWPTMSGQLRLATSVSKEVMLCHVVVPTKYLKSDS
CDVSCLNNFQVKETIVSRWISTKEREKELLDIDCDF

Nucleotide sequence

Length: 1,124

>KH2012:KH.C8.12.v1.A.nonSL1-1
TCAAAATTTGTAGGTACATCATCATACGATTATTTGCCCAAGGAATACAGAATATATATA
AAGTATATGGCAATTTTTCGACCCCCACAGAAGAAGAAAGGTGCTTCAAAGGAGTTTTTC
ACTCCATTACCTGTGCCAATCGCAAGTATTAACAAAGCAGTCCCGAAACTTGAGTTATGG
AGTTATTACGATGGTCATTTAAAAGAGGATCATATTAAAGTAGAACTAAAAGGAGACATT
CATTGTCTACACACACAAGGTTTCTTTGGCAGGTTAGTAAAAACTGCAACCCAAAATGAT
GAACCAACAGAAGATGAAAAGTCGAAACTATCTATCGATTGCAAAGGCTCTGACACATCT
ACAAATCACGATTCCTGCTTGAATAAAATCAGTGGTCACTCATCCACCATTCCCACACAA
CATAAACAGCATGAAACTGCACTAGCTGCAAAAGTAGAAGAGATTTTAGTTCTGACATAT
GAAGAAGCATTTTTTCTATCTTATGGACTTGGCTGCTTGTTTGTCAAGGACTATAATGGA
GAGAACATAAATATAGAACAGCAGTGGAATATTTTCTGTAAACGCAACATGCGGTTTCCA
GTCACATACTGTGCATATCATCACTTCAGAAGCAAAGGTTGGGTTCCAAGGGATGGCATA
CGCTATGGTGGTGACTTGGTGTTGTATAGGAAAGGCCCACCTTATTACCACGCAAGCTAC
ATTGTGATAATTGTGTCAGTGGATGCAGAAACTTTACAGGAAACTGTTTTTAGAGAGGCC
AAGAACAGAACATTTTCATGGCCCACAATGTCAGGGCAACTGAGGCTAGCTACCTCTGTT
TCAAAAGAGGTTATGCTCTGTCATGTGGTGGTGCCAACAAAGTACCTGAAATCAGATTCG
TGTGATGTATCATGTTTGAATAACTTTCAAGTTAAAGAAACCATTGTTTCAAGATGGATT
TCCACAAAGGAAAGGGAAAAGGAACTTTTGGATATAGACTGTGACTTTTAATTTAATATA
TGATGTACTACTGTACTTGTTTACCATTTAAAAAAGTTCATAATATGGTTCAAAGTTTTT
GTCCCAATCATGCAAATTAACCTTTTATTTTTTTCTGCTCCAAG

InterProScan

PIRSF
tRNA_splic_SEN2 (IPR016589) - T[22-61] 140.0 - T[47-143] 0.74 - T[91-326] 3.9E-58
PANTHER
tRNA_splic (IPR006676) - T[26-109] 5.7E-69 - T[104-328] 5.7E-69
Pfam
tRNA_intron_Endonuc_N (IPR006678) - T[64-187] 1.3E-6
Gene3D
tRNA_endonuc-like_dom_sf (IPR011856) - T[196-301] 2.2E-26
SUPERFAMILY
tRNA_intron_Endo_cat-like_sf (IPR036167) - T[198-294] 3.49E-24
Pfam
tRNA_intron_Endonuc_cat-like (IPR006677) - T[201-289] 2.3E-22

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SEN2_HUMAN 44.571 % 158 1.07E-44