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  1. Transcript 'KH2012:KH.C7.453.v1....'

Transcript Model

Transcript Id

KH2012:KH.C7.453.v1.A.SL2-1

Possible name(s)

CEP78; LRRC74B; NLRC3

Gene model

KH2012:KH.C7.453

Location

KhC7 [3,093,395 / 3,095,895]

Sequences

Amino acid sequence

Length: 502

>KH.C7.453.v1.A.SL2-1
AKEIKKNKSLTHLQFDYCQISDNGAKILCHTLKSHPSIPHLSVSGCNITSAGAEMIAKLV
KHQATQRHSEAWADGLRYRTPNLSLMSGIRRISLNSNPMISDEGAEAFADALKDDLWLKA
LDLQHCGISSEGADKIMSTIKHNNTIVVLDIRGNPMVDTGTLRKVLGKVLMNVNGNDEND
YPWVKEEPPKDPYRTGKPRRPTRNISRSFTKKQTQKSLKQAAGEEGVPDVYPPGHKSFVP
WRTAVRASQHKLGFCDKSDEEEDLDESSEVLRVMQESSKPSFVDTTFSVTGGGDQNPIDQ
SLLTKRECEEYIKRLKIDLLDAKRRLSMSQESEKKLNNKIMSLEVENSRLRHDLKTSFEN
SRMRSQIEEEGLLDSIETSFNKFHEFLNTLNDVGLGSLATAAGLDDLTKNMPKNTADKMY
QHTGKGDETSKETLPLKNPILIEGSKLDGKENGNAAKTKIPSETQPAEKDKNTKSKASDM
STHTDPSNLSRTDLSSSVGSNF

Nucleotide sequence

Length: 2,500

>KH2012:KH.C7.453.v1.A.SL2-1
CAAATCATTTCAGGTGTGTATTAAAGAAAGTGGCTTTGCAGAAAAACGTAAAATGATTCC
TGAAAGCGTCGCAGTACGACAGCGCGGTGCATTTGATTTCGCGAGCTGTTATGACAACTT
ATGTGCCCTACAATCCACTGTCCCGCTTTCAACTGTGAAAGCTCACTTGGCAAATGGAAT
ATTAGATATAAATGGTGACAAAATACGAATGATAGATTGGTCGCCAATTTTAAACACTTT
AAAAATCAACCGAAATTTGCGTTACGTCTCAATTAAAAGCTACTTCCCAACCAACGGGAA
TTCCAATGGGATTCTTTATTTTAAAGGAGGGACCCCAGCAATTCGATGCAAGAATGTGAC
AATGGGAAAAGCCAAGGTCTTGGGCTTCTTGCATTTCCCCAGTCAACCAATAATTAGATG
CATTGATCTTCAAGGGGGTTCCGATAAGAGAACGTGACTTACAAATATAAGCCAAAGAAA
TCAAAAAAAATAAATCTCTCACTCATTTACAGTTTGACTACTGTCAGATTTCAGATAATG
GGGCGAAAATTTTGTGCCATACACTTAAAAGTCACCCAAGTATACCCCATTTAAGTGTAA
GTGGGTGTAACATTACTTCAGCAGGAGCGGAAATGATTGCGAAATTGGTAAAGCATCAGG
CCACACAGAGGCACAGTGAGGCATGGGCTGATGGATTGAGATACAGGACTCCTAATCTCA
GTTTAATGAGTGGAATCCGAAGAATAAGTCTCAACTCCAACCCTATGATAAGTGATGAAG
GAGCTGAAGCTTTTGCTGATGCGTTAAAAGATGATCTTTGGTTGAAAGCTTTGGATTTGC
AACACTGTGGGATAAGCTCGGAAGGAGCTGACAAGATTATGTCGACTATAAAACACAACA
ATACAATTGTGGTCCTTGATATCAGAGGAAACCCTATGGTTGATACTGGGACCTTAAGAA
AGGTTCTGGGTAAAGTTTTAATGAATGTAAATGGAAATGATGAAAACGATTACCCCTGGG
TGAAGGAAGAGCCCCCTAAAGACCCCTACAGGACAGGAAAACCAAGACGCCCCACTAGGA
ATATAAGCAGAAGCTTCACCAAAAAACAAACCCAGAAAAGTTTGAAGCAAGCAGCAGGAG
AGGAAGGAGTACCGGATGTTTATCCTCCAGGACATAAAAGTTTTGTTCCTTGGAGGACTG
CAGTGAGAGCTTCCCAACATAAGCTGGGATTCTGTGATAAGAGTGATGAGGAAGAGGATC
TGGATGAATCCTCCGAAGTCCTCCGAGTGATGCAGGAGTCCTCCAAGCCATCTTTTGTGG
ATACAACGTTCTCTGTTACTGGAGGTGGGGATCAGAATCCAATTGATCAATCTTTATTGA
CAAAGAGAGAGTGTGAAGAGTATATCAAGAGGCTCAAGATTGATCTTCTGGATGCTAAAA
GAAGACTTTCAATGTCGCAAGAAAGCGAGAAAAAATTAAACAACAAAATCATGAGTCTTG
AGGTGGAAAATTCAAGATTACGTCACGATTTAAAAACAAGCTTTGAAAATAGTAGGATGA
GGTCTCAGATTGAAGAAGAGGGTCTTCTTGATAGTATTGAGACTTCCTTTAATAAGTTTC
ATGAGTTTTTGAACACTTTAAATGATGTTGGTTTAGGCTCATTGGCCACTGCTGCTGGGT
TAGATGATTTAACCAAAAATATGCCAAAAAATACAGCAGATAAAATGTATCAGCATACTG
GAAAAGGTGATGAAACTTCGAAAGAGACTTTACCTCTTAAAAATCCTATTTTGATTGAAG
GGTCAAAGTTAGATGGCAAAGAAAATGGGAATGCAGCTAAAACTAAAATACCCAGTGAAA
CCCAACCTGCAGAAAAGGACAAAAACACAAAATCAAAAGCTTCGGATATGTCTACCCACA
CTGATCCTAGTAACTTATCTCGTACTGATTTATCCTCTTCTGTGGGGTCTAACTTCTAGT
CATAGGCGCCAAACCAGGGGCGGCAGGGTAGGCAGGACTCACCCGAAATTTTCTGCACTG
TATTAATTAGTAACATTAGAAACCAAAAAGTTAGAATGGTTTCACAAAATTTGCATCCAC
TTATCCTTGTCTAAACTGCATTTTGAAAAGTTTGGTGCTTGTTTTTATGAATTGTAGCTT
TTTTTCTATCTCAGTGTAATTTTTCTTTGGAAATCCTGTTCTAGTTTGTACTGTGTATGT
TTTAATGTTACCATTTAACATATATTACTCTGCATTAGCATGTACTGTGTATAATAACTA
TAACATGTAAGTGTATGCTTTATTGCATAGTTCAGTTTTTTTTTCATAATTTTTATCCTG
TTTTGCGCAATCTGTTTTTTTCATAATTTTCATCCTGTTTTGTGCTATTTTACCAAATAA
TTCCAGATTTTTAAATCCGTTTACTGGACCATTTTATTTATTTAGTGCTTACTCCTATCT
ATAGATCTAATTAAGCTGACATTTGTTTATATTTTACTAG

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[1-77] 1.8E-13 - T[83-172] 1.5E-15
Pfam
Leu-rich_rpt (IPR001611) - T[6-26] 0.012 - T[40-57] 0.087 - T[90-109] 0.2 - T[117-137] 0.0023
PRINTS
Cep78 (IPR026212) - T[25-46] 3.5E-20 - T[48-63] 3.5E-20 - T[72-90] 3.5E-20 - T[110-129] 3.5E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CEP78_HUMAN 37.011 % 271 3.01E-83