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- Transcript 'KH2012:KH.C5.40.v4.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.40.v4.A.SL2-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC5 [3,354,086 / 3,355,371]
Amino acid sequence
Length: 267
>KH.C5.40.v4.A.SL2-1
SNKKSMAGSRVFIGRLSNRATESDVERFFKGFGRIREVKLKTGYGFVEFEENRDAEDAVY
EMNNQSLCGERVTVEHAKGTPRRGGDFRGGGSYGRGGGGGGGNYRGYDNNYGGRNGGGFR
GGRDDRFGGGRGSGRFGPPSRTKYRVIVENLSSRVSWQDLKDYLRQAGDVSFAEAHQSVQ
NEGIVDFATYDDMKAAIEKLDDTELSGRKIRLIEDKPASRSRSRSRSRSRSRSRSPRRSR
SRSPYAGRYNRRSRSDSRSPSRSPNNN
Nucleotide sequence
Length: 1,285
>KH2012:KH.C5.40.v4.A.SL2-1
TCCAATAAGAAAAGTATGGCAGGTAGTCGTGTATTTATCGGACGTTTAAGCAACCGTGCC
ACTGAATCCGATGTGGAGAGATTCTTCAAAGGGTTCGGTCGAATTCGGGAAGTCAAGCTG
AAGACTGGATATGGTTTCGTCGAGTTTGAAGAAAACCGTGACGCAGAGGATGCTGTGTAC
GAGATGAACAACCAGTCTCTGTGTGGAGAGCGTGTCACTGTGGAGCACGCAAAAGGTACT
CCAAGAAGAGGAGGAGATTTCCGAGGAGGTGGATCATACGGTCGTGGTGGAGGCGGTGGA
GGAGGAAATTATCGGGGATACGATAATAACTACGGAGGAAGAAACGGGGGAGGTTTTAGA
GGAGGAAGGGATGATCGTTTTGGGGGCGGGAGAGGTTCTGGGAGATTTGGTCCTCCCTCT
CGCACCAAGTATCGGGTGATTGTGGAGAACTTATCTTCAAGAGTGAGCTGGCAGGATTTG
AAAGATTATCTTCGTCAAGCTGGGGATGTTTCCTTTGCTGAAGCTCATCAGTCCGTACAA
AACGAAGGAATTGTTGATTTTGCAACTTACGATGACATGAAGGCTGCGATTGAGAAACTG
GACGACACAGAGCTTAGTGGCAGGAAGATCAGATTGATCGAGGATAAACCTGCATCCAGG
AGCAGAAGTCGGAGCAGGAGTCGAAGCAGAAGCAGATCCAGGAGTCCCAGAAGATCTCGT
TCCCGATCCCCATACGCAGGCCGATACAACCGTCGCAGTCGTTCAGATTCAAGGTCACCT
TCCCGATCACCCAATAATAATTGAACATGACAAATAAAAGAAAAGTTGTGACTCAGTATG
CAACTGCCTATTTTACAAAATGGCATTGCTACTTTTTACATCGTGTATTGGTTGTAAAGT
AAATTTTGACAAATTATTCCTGCCATAAAACATCCAATGTTTTAGTTTTGAGATCCATAT
CTTAATCAGACACATTTTCCTGCGTCTCCAAATGTTAAAAAAAACTGTTGAATGATTTAC
AAATATGTATGTGCTTTTGTTTTGACATGTATTTTCTTTGGTTTTACAATTTCAAATTCT
TATGTTGGCGATAGTTGATAACTGCTTATGCGGATGTAAAATCTTATTTTATTAAGGTGT
TATCGTATACATACAACTTTAGTTCTCAGTGTGCATTGCATTGACAATAAAAATATTTCA
AACTAGAAACTTCTCACATCTGTAAATATAAACGTACCAGCTAAGTTAACTGTAACCAGT
AATTGATGTTTGGTTTAAATTGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-86] 4.2E-22 - T[143-216] 1.5E-22 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[9-89] 6.25E-33 - T[141-213] 6.25E-33 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[9-79] 16.995 - T[144-217] 11.656 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[10-79] 2.73609E-36 |
| SMART |
RRM_dom (IPR000504) - T[10-75] 2.5E-18 - T[145-213] 9.0E-10 |
| Pfam |
RRM_dom (IPR000504) - T[11-72] 6.5E-16 - T[146-211] 7.6E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 57.895 % | 234 | 1.89E-74 |
| SRSF6_HUMAN | 53.846 % | 210 | 1.2E-66 |
| SRSF5_HUMAN | 52.153 % | 197 | 1.3E-62 |