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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.40.v1.A...' > 
  2. Transcript 'KH2012:KH.C1.799.v1....' > 
  3. Transcript 'KH2012:KH.C5.40.v4.A...' > 
  4. Transcript 'KH2012:KH.C5.40.v3.A...' > 
  5. Transcript 'KH2012:KH.C5.40.v4.A...'

Transcript Model

Transcript Id

KH2012:KH.C5.40.v4.A.nonSL6-1

Possible name(s)

SRSF4; SRSF5; SRSF6

Gene model

KH2012:KH.C5.40

Location

KhC5 [3,354,086 / 3,355,148]

Sequences

Amino acid sequence

Length: 192

>KH.C5.40.v4.A.nonSL6-1
HAKGTPRRGGDFRGGGSYGRGGGGGGGNYRGYDNNYGGRNGGGFRGGRDDRFGGGRGSGR
FGPPSRTKYRVIVENLSSRVSWQDLKDYLRQAGDVSFAEAHQSVQNEGIVDFATYDDMKA
AIEKLDDTELSGRKIRLIEDKPASRSRSRSRSRSRSRSRSPRRSRSRSPYAGRYNRRSRS
DSRSPSRSPNNN

Nucleotide sequence

Length: 1,062

>KH2012:KH.C5.40.v4.A.nonSL6-1
AGCACGCAAAAGGTACTCCAAGAAGAGGAGGAGATTTCCGAGGAGGTGGATCATACGGTC
GTGGTGGAGGCGGTGGAGGAGGAAATTATCGGGGATACGATAATAACTACGGAGGAAGAA
ACGGGGGAGGTTTTAGAGGAGGAAGGGATGATCGTTTTGGGGGCGGGAGAGGTTCTGGGA
GATTTGGTCCTCCCTCTCGCACCAAGTATCGGGTGATTGTGGAGAACTTATCTTCAAGAG
TGAGCTGGCAGGATTTGAAAGATTATCTTCGTCAAGCTGGGGATGTTTCCTTTGCTGAAG
CTCATCAGTCCGTACAAAACGAAGGAATTGTTGATTTTGCAACTTACGATGACATGAAGG
CTGCGATTGAGAAACTGGACGACACAGAGCTTAGTGGCAGGAAGATCAGATTGATCGAGG
ATAAACCTGCATCCAGGAGCAGAAGTCGGAGCAGGAGTCGAAGCAGAAGCAGATCCAGGA
GTCCCAGAAGATCTCGTTCCCGATCCCCATACGCAGGCCGATACAACCGTCGCAGTCGTT
CAGATTCAAGGTCACCTTCCCGATCACCCAATAATAATTGAACATGACAAATAAAAGAAA
AGTTGTGACTCAGTATGCAACTGCCTATTTTACAAAATGGCATTGCTACTTTTTACATCG
TGTATTGGTTGTAAAGTAAATTTTGACAAATTATTCCTGCCATAAAACATCCAATGTTTT
AGTTTTGAGATCCATATCTTAATCAGACACATTTTCCTGCGTCTCCAAATGTTAAAAAAA
ACTGTTGAATGATTTACAAATATGTATGTGCTTTTGTTTTGACATGTATTTTCTTTGGTT
TTACAATTTCAAATTCTTATGTTGGCGATAGTTGATAACTGCTTATGCGGATGTAAAATC
TTATTTTATTAAGGTGTTATCGTATACATACAACTTTAGTTCTCAGTGTGCATTGCATTG
ACAATAAAAATATTTCAAACTAGAAACTTCTCACATCTGTAAATATAAACGTACCAGCTA
AGTTAACTGTAACCAGTAATTGATGTTTGGTTTAAATTGTAG

InterProScan

SUPERFAMILY
RBD_domain_sf (IPR035979) - T[62-154] 1.07E-20
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[68-141] 7.9E-23
ProSiteProfiles
RRM_dom (IPR000504) - T[69-142] 11.656
SMART
RRM_dom (IPR000504) - T[70-138] 9.0E-10
Pfam
RRM_dom (IPR000504) - T[71-136] 4.0E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SRSF4_HUMAN 59.821 % 139 5.01E-39
SRSF6_HUMAN 50.704 % 111 1.22E-29
SRSF5_HUMAN 61.957 % 115 8.23E-32