- Clone 'cima821723' >
- Transcript 'KH2012:KH.C5.40.v2.A...' >
- Transcript 'KH2012:KH.C5.40.v1.A...' >
- Transcript 'KH2012:KH.C1.799.v1....' >
- Transcript 'KH2012:KH.C5.40.v4.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.40.v4.A.nonSL4-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC5 [3,354,086 / 3,355,243]
Amino acid sequence
Length: 224
>KH.C5.40.v4.A.nonSL4-1
YGFVEFEENRDAEDAVYEMNNQSLCGERVTVEHAKGTPRRGGDFRGGGSYGRGGGGGGGN
YRGYDNNYGGRNGGGFRGGRDDRFGGGRGSGRFGPPSRTKYRVIVENLSSRVSWQDLKDY
LRQAGDVSFAEAHQSVQNEGIVDFATYDDMKAAIEKLDDTELSGRKIRLIEDKPASRSRS
RSRSRSRSRSRSPRRSRSRSPYAGRYNRRSRSDSRSPSRSPNNN
Nucleotide sequence
Length: 1,157
>KH2012:KH.C5.40.v4.A.nonSL4-1
ATATGGTTTCGTCGAGTTTGAAGAAAACCGTGACGCAGAGGATGCTGTGTACGAGATGAA
CAACCAGTCTCTGTGTGGAGAGCGTGTCACTGTGGAGCACGCAAAAGGTACTCCAAGAAG
AGGAGGAGATTTCCGAGGAGGTGGATCATACGGTCGTGGTGGAGGCGGTGGAGGAGGAAA
TTATCGGGGATACGATAATAACTACGGAGGAAGAAACGGGGGAGGTTTTAGAGGAGGAAG
GGATGATCGTTTTGGGGGCGGGAGAGGTTCTGGGAGATTTGGTCCTCCCTCTCGCACCAA
GTATCGGGTGATTGTGGAGAACTTATCTTCAAGAGTGAGCTGGCAGGATTTGAAAGATTA
TCTTCGTCAAGCTGGGGATGTTTCCTTTGCTGAAGCTCATCAGTCCGTACAAAACGAAGG
AATTGTTGATTTTGCAACTTACGATGACATGAAGGCTGCGATTGAGAAACTGGACGACAC
AGAGCTTAGTGGCAGGAAGATCAGATTGATCGAGGATAAACCTGCATCCAGGAGCAGAAG
TCGGAGCAGGAGTCGAAGCAGAAGCAGATCCAGGAGTCCCAGAAGATCTCGTTCCCGATC
CCCATACGCAGGCCGATACAACCGTCGCAGTCGTTCAGATTCAAGGTCACCTTCCCGATC
ACCCAATAATAATTGAACATGACAAATAAAAGAAAAGTTGTGACTCAGTATGCAACTGCC
TATTTTACAAAATGGCATTGCTACTTTTTACATCGTGTATTGGTTGTAAAGTAAATTTTG
ACAAATTATTCCTGCCATAAAACATCCAATGTTTTAGTTTTGAGATCCATATCTTAATCA
GACACATTTTCCTGCGTCTCCAAATGTTAAAAAAAACTGTTGAATGATTTACAAATATGT
ATGTGCTTTTGTTTTGACATGTATTTTCTTTGGTTTTACAATTTCAAATTCTTATGTTGG
CGATAGTTGATAACTGCTTATGCGGATGTAAAATCTTATTTTATTAAGGTGTTATCGTAT
ACATACAACTTTAGTTCTCAGTGTGCATTGCATTGACAATAAAAATATTTCAAACTAGAA
ACTTCTCACATCTGTAAATATAAACGTACCAGCTAAGTTAACTGTAACCAGTAATTGATG
TTTGGTTTAAATTGTAG
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-36] 9.013 - T[101-174] 11.656 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[1-46] 2.8E-21 - T[98-169] 2.8E-21 |
| Pfam |
RRM_dom (IPR000504) - T[1-29] 5.9E-5 - T[103-168] 5.5E-11 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-72] 2.8E-10 - T[100-173] 1.1E-22 |
| SMART |
RRM_dom (IPR000504) - T[102-170] 9.0E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 55.429 % | 186 | 1.36E-56 |
| SRSF6_HUMAN | 52.874 % | 168 | 4.26E-51 |
| SRSF5_HUMAN | 48.538 % | 146 | 2.51E-43 |