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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C12.624.v1...' > 
  2. Transcript 'Boleac.CG.SB_v3.S368...' > 
  3. Transcript 'Haaura.CG.MTP2014.S6...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  5. Transcript 'KH2012:KH.C5.40.v4.A...'

Transcript Model

Transcript Id

KH2012:KH.C5.40.v4.A.nonSL3-1

Possible name(s)

SRSF4; SRSF5; SRSF6

Gene model

KH2012:KH.C5.40

Location

KhC5 [3,354,086 / 3,355,164]

Sequences

Amino acid sequence

Length: 198

>KH.C5.40.v4.A.nonSL3-1
ERVTVEHAKGTPRRGGDFRGGGSYGRGGGGGGGNYRGYDNNYGGRNGGGFRGGRDDRFGG
GRGSGRFGPPSRTKYRVIVENLSSRVSWQDLKDYLRQAGDVSFAEAHQSVQNEGIVDFAT
YDDMKAAIEKLDDTELSGRKIRLIEDKPASRSRSRSRSRSRSRSRSPRRSRSRSPYAGRY
NRRSRSDSRSPSRSPNNN

Nucleotide sequence

Length: 1,078

>KH2012:KH.C5.40.v4.A.nonSL3-1
GAGCGTGTCACTGTGGAGCACGCAAAAGGTACTCCAAGAAGAGGAGGAGATTTCCGAGGA
GGTGGATCATACGGTCGTGGTGGAGGCGGTGGAGGAGGAAATTATCGGGGATACGATAAT
AACTACGGAGGAAGAAACGGGGGAGGTTTTAGAGGAGGAAGGGATGATCGTTTTGGGGGC
GGGAGAGGTTCTGGGAGATTTGGTCCTCCCTCTCGCACCAAGTATCGGGTGATTGTGGAG
AACTTATCTTCAAGAGTGAGCTGGCAGGATTTGAAAGATTATCTTCGTCAAGCTGGGGAT
GTTTCCTTTGCTGAAGCTCATCAGTCCGTACAAAACGAAGGAATTGTTGATTTTGCAACT
TACGATGACATGAAGGCTGCGATTGAGAAACTGGACGACACAGAGCTTAGTGGCAGGAAG
ATCAGATTGATCGAGGATAAACCTGCATCCAGGAGCAGAAGTCGGAGCAGGAGTCGAAGC
AGAAGCAGATCCAGGAGTCCCAGAAGATCTCGTTCCCGATCCCCATACGCAGGCCGATAC
AACCGTCGCAGTCGTTCAGATTCAAGGTCACCTTCCCGATCACCCAATAATAATTGAACA
TGACAAATAAAAGAAAAGTTGTGACTCAGTATGCAACTGCCTATTTTACAAAATGGCATT
GCTACTTTTTACATCGTGTATTGGTTGTAAAGTAAATTTTGACAAATTATTCCTGCCATA
AAACATCCAATGTTTTAGTTTTGAGATCCATATCTTAATCAGACACATTTTCCTGCGTCT
CCAAATGTTAAAAAAAACTGTTGAATGATTTACAAATATGTATGTGCTTTTGTTTTGACA
TGTATTTTCTTTGGTTTTACAATTTCAAATTCTTATGTTGGCGATAGTTGATAACTGCTT
ATGCGGATGTAAAATCTTATTTTATTAAGGTGTTATCGTATACATACAACTTTAGTTCTC
AGTGTGCATTGCATTGACAATAAAAATATTTCAAACTAGAAACTTCTCACATCTGTAAAT
ATAAACGTACCAGCTAAGTTAACTGTAACCAGTAATTGATGTTTGGTTTAAATTGTAG

InterProScan

SUPERFAMILY
RBD_domain_sf (IPR035979) - T[68-160] 1.15E-20
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[74-147] 8.4E-23
ProSiteProfiles
RRM_dom (IPR000504) - T[75-148] 11.656
SMART
RRM_dom (IPR000504) - T[76-144] 9.0E-10
Pfam
RRM_dom (IPR000504) - T[77-142] 4.3E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SRSF4_HUMAN 53.02 % 145 1.76E-41
SRSF6_HUMAN 63.953 % 127 1.94E-35
SRSF5_HUMAN 46.207 % 109 2.89E-29