- Transcript 'KH2012:KH.C5.40.v2.A...' >
- Transcript 'KH2012:KH.C5.40.v1.A...' >
- Transcript 'KH2012:KH.C1.799.v1....' >
- Transcript 'KH2012:KH.C5.40.v4.A...' >
- Transcript 'KH2012:KH.C5.40.v3.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.40.v3.A.nonSL5-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC5 [3,354,086 / 3,356,147]
Amino acid sequence
Length: 308
>KH.C5.40.v3.A.nonSL5-1
SLFALGYRLVYYFGSMKLLRLFRNFWTFPDQIQISTIAFHGLILTTGESSRVFIGRLSNR
ATESDVERFFKGFGRIREVKLKTGYGFVEFEENRDAEDAVYEMNNQSLCGERVTVEHAKG
TPRRGGDFRGGGSYGRGGGGGGGNYRGYDNNYGGRNGGGFRGGRDDRFGGGRGSGRFGPP
SRTKYRVIVENLSSRVSWQDLKDYLRQAGDVSFAEAHQSVQNEGIVDFATYDDMKAAIEK
LDDTELSGRKIRLIEDKPASRSRSRSRSRSRSRSRSPRRSRSRSPYAGRYNRRSRSDSRS
PSRSPNNN
Nucleotide sequence
Length: 1,411
>KH2012:KH.C5.40.v3.A.nonSL5-1
TAGTCGCTCTTCGCTTTGGGTTATCGGCTTGTTTACTACTTTGGGAGTATGAAACTATTA
CGTTTATTCAGAAATTTCTGGACCTTTCCGGACCAAATCCAAATTTCCACCATTGCCTTC
CATGGCTTGATTCTAACCACGGGAGAAAGTAGTCGTGTATTTATCGGACGTTTAAGCAAC
CGTGCCACTGAATCCGATGTGGAGAGATTCTTCAAAGGGTTCGGTCGAATTCGGGAAGTC
AAGCTGAAGACTGGATATGGTTTCGTCGAGTTTGAAGAAAACCGTGACGCAGAGGATGCT
GTGTACGAGATGAACAACCAGTCTCTGTGTGGAGAGCGTGTCACTGTGGAGCACGCAAAA
GGTACTCCAAGAAGAGGAGGAGATTTCCGAGGAGGTGGATCATACGGTCGTGGTGGAGGC
GGTGGAGGAGGAAATTATCGGGGATACGATAATAACTACGGAGGAAGAAACGGGGGAGGT
TTTAGAGGAGGAAGGGATGATCGTTTTGGGGGCGGGAGAGGTTCTGGGAGATTTGGTCCT
CCCTCTCGCACCAAGTATCGGGTGATTGTGGAGAACTTATCTTCAAGAGTGAGCTGGCAG
GATTTGAAAGATTATCTTCGTCAAGCTGGGGATGTTTCCTTTGCTGAAGCTCATCAGTCC
GTACAAAACGAAGGAATTGTTGATTTTGCAACTTACGATGACATGAAGGCTGCGATTGAG
AAACTGGACGACACAGAGCTTAGTGGCAGGAAGATCAGATTGATCGAGGATAAACCTGCA
TCCAGGAGCAGAAGTCGGAGCAGGAGTCGAAGCAGAAGCAGATCCAGGAGTCCCAGAAGA
TCTCGTTCCCGATCCCCATACGCAGGCCGATACAACCGTCGCAGTCGTTCAGATTCAAGG
TCACCTTCCCGATCACCCAATAATAATTGAACATGACAAATAAAAGAAAAGTTGTGACTC
AGTATGCAACTGCCTATTTTACAAAATGGCATTGCTACTTTTTACATCGTGTATTGGTTG
TAAAGTAAATTTTGACAAATTATTCCTGCCATAAAACATCCAATGTTTTAGTTTTGAGAT
CCATATCTTAATCAGACACATTTTCCTGCGTCTCCAAATGTTAAAAAAAACTGTTGAATG
ATTTACAAATATGTATGTGCTTTTGTTTTGACATGTATTTTCTTTGGTTTTACAATTTCA
AATTCTTATGTTGGCGATAGTTGATAACTGCTTATGCGGATGTAAAATCTTATTTTATTA
AGGTGTTATCGTATACATACAACTTTAGTTCTCAGTGTGCATTGCATTGACAATAAAAAT
ATTTCAAACTAGAAACTTCTCACATCTGTAAATATAAACGTACCAGCTAAGTTAACTGTA
ACCAGTAATTGATGTTTGGTTTAAATTGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[45-127] 6.4E-22 - T[184-257] 2.0E-22 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[49-130] 4.48E-33 - T[182-254] 4.48E-33 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[50-120] 16.995 - T[185-258] 11.656 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[51-120] 1.21973E-36 |
| SMART |
RRM_dom (IPR000504) - T[51-116] 2.5E-18 - T[186-254] 9.0E-10 |
| Pfam |
RRM_dom (IPR000504) - T[52-113] 8.3E-16 - T[187-252] 9.7E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 57.895 % | 231 | 1.01E-72 |
| SRSF6_HUMAN | 53.846 % | 208 | 1.98E-65 |
| SRSF5_HUMAN | 51.942 % | 192 | 7.14E-60 |