- Transcript 'KH2012:KH.C1.799.v1....' >
- Transcript 'KH2012:KH.C5.40.v4.A...' >
- Transcript 'KH2012:KH.C5.40.v3.A...' >
- Transcript 'KH2012:KH.C5.40.v4.A...' >
- Transcript 'KH2012:KH.C5.40.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.40.v2.A.ND1-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC5 [3,354,086 / 3,356,162]
Amino acid sequence
Length: 281
>KH.C5.40.v2.A.ND1-1
HLFFTKAFSQTNHNLFKRNVIGSRVFIGRLSNRATESDVERFFKGFGRIREVKLKTGYGF
VEFEENRDAEDAVYEMNNQSLCGERVTVEHAKGTPRRGGDFRGGGSYGRGGGGGGGNYRG
YDNNYGGRNGGGFRGGRDDRFGGGRGSGRFGPPSRTKYRVIVENLSSRVSWQDLKDYLRQ
AGDVSFAEAHQSVQNEGIVDFATYDDMKAAIEKLDDTELSGRKIRLIEDKPASRSRSRSR
SRSRSRSRSPRRSRSRSPYAGRYNRRSRSDSRSPSRSPNNN
Nucleotide sequence
Length: 1,670
>KH2012:KH.C5.40.v2.A.ND1-1
TTGCCAGCGAAATTTTAGTCGCTCTTCGCTTTGGGTTATCGGCTTGTTTACTACTTTGGG
AGTATGAAACTATTACGTTTATTCAGAAATTTCTGGACCTTTCCGGACCAAATCCAAATT
TCCACCATTGCCTTCCATGGCTTGATTCTAACCACGGGAGAAAGCGAGAAATAGATTTGC
CGCCATTTTCTTTGGGAGTCTCTCGATTCCAGTCTCAATCCCTAACTAGCCATGCCTGGT
CTGTCCTCCTACCTAACTCCACTGCGTCCTTATGGCTCTCCTGGTCCATGGTTGCCACTG
GCTGTGGTTTCCCGCACATTGTACCGGATCCTACACGACTTAACATCTGTTTTTTACCAA
GGCATTTTCCCAAACTAATCATAATCTGTTCAAGAGAAATGTAATTGGTAGTCGTGTATT
TATCGGACGTTTAAGCAACCGTGCCACTGAATCCGATGTGGAGAGATTCTTCAAAGGGTT
CGGTCGAATTCGGGAAGTCAAGCTGAAGACTGGATATGGTTTCGTCGAGTTTGAAGAAAA
CCGTGACGCAGAGGATGCTGTGTACGAGATGAACAACCAGTCTCTGTGTGGAGAGCGTGT
CACTGTGGAGCACGCAAAAGGTACTCCAAGAAGAGGAGGAGATTTCCGAGGAGGTGGATC
ATACGGTCGTGGTGGAGGCGGTGGAGGAGGAAATTATCGGGGATACGATAATAACTACGG
AGGAAGAAACGGGGGAGGTTTTAGAGGAGGAAGGGATGATCGTTTTGGGGGCGGGAGAGG
TTCTGGGAGATTTGGTCCTCCCTCTCGCACCAAGTATCGGGTGATTGTGGAGAACTTATC
TTCAAGAGTGAGCTGGCAGGATTTGAAAGATTATCTTCGTCAAGCTGGGGATGTTTCCTT
TGCTGAAGCTCATCAGTCCGTACAAAACGAAGGAATTGTTGATTTTGCAACTTACGATGA
CATGAAGGCTGCGATTGAGAAACTGGACGACACAGAGCTTAGTGGCAGGAAGATCAGATT
GATCGAGGATAAACCTGCATCCAGGAGCAGAAGTCGGAGCAGGAGTCGAAGCAGAAGCAG
ATCCAGGAGTCCCAGAAGATCTCGTTCCCGATCCCCATACGCAGGCCGATACAACCGTCG
CAGTCGTTCAGATTCAAGGTCACCTTCCCGATCACCCAATAATAATTGAACATGACAAAT
AAAAGAAAAGTTGTGACTCAGTATGCAACTGCCTATTTTACAAAATGGCATTGCTACTTT
TTACATCGTGTATTGGTTGTAAAGTAAATTTTGACAAATTATTCCTGCCATAAAACATCC
AATGTTTTAGTTTTGAGATCCATATCTTAATCAGACACATTTTCCTGCGTCTCCAAATGT
TAAAAAAAACTGTTGAATGATTTACAAATATGTATGTGCTTTTGTTTTGACATGTATTTT
CTTTGGTTTTACAATTTCAAATTCTTATGTTGGCGATAGTTGATAACTGCTTATGCGGAT
GTAAAATCTTATTTTATTAAGGTGTTATCGTATACATACAACTTTAGTTCTCAGTGTGCA
TTGCATTGACAATAAAAATATTTCAAACTAGAAACTTCTCACATCTGTAAATATAAACGT
ACCAGCTAAGTTAACTGTAACCAGTAATTGATGTTTGGTTTAAATTGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[17-129] 9.1E-22 - T[157-230] 1.7E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[23-93] 16.995 - T[158-231] 11.656 |
| SMART |
RRM_dom (IPR000504) - T[24-89] 2.5E-18 - T[159-227] 9.0E-10 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[24-103] 8.19E-33 - T[155-227] 8.19E-33 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[24-93] 3.08288E-36 |
| Pfam |
RRM_dom (IPR000504) - T[25-86] 7.1E-16 - T[160-225] 8.3E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 57.895 % | 233 | 8.01E-74 |
| SRSF6_HUMAN | 53.589 % | 209 | 4.11E-66 |
| SRSF5_HUMAN | 52.174 % | 194 | 3.14E-61 |