- Clone 'ciad045n02' >
- Clone 'cima836311' >
- Clone 'cima821723' >
- Transcript 'KH2012:KH.C5.40.v2.A...' >
- Transcript 'KH2012:KH.C5.40.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.40.v1.A.nonSL5-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC5 [3,354,086 / 3,356,147]
Amino acid sequence
Length: 301
>KH.C5.40.v1.A.nonSL5-1
VTHRIKEIGITYNQTNLTLTVLFFMILTFDFHLKSNKKSMAGSRVFIGRLSNRATESDVE
RFFKGFGRIREVKLKTGYGFVEFEENRDAEDAVYEMNNQSLCGERVTVEHAKGTPRRGGD
FRGGGSYGRGGGGGGGNYRGYDNNYGGRNGGGFRGGRDDRFGGGRGSGRFGPPSRTKYRV
IVENLSSRVSWQDLKDYLRQAGDVSFAEAHQSVQNEGIVDFATYDDMKAAIEKLDDTELS
GRKIRLIEDKPASRSRSRSRSRSRSRSRSPRRSRSRSPYAGRYNRRSRSDSRSPSRSPNN
N
Nucleotide sequence
Length: 1,837
>KH2012:KH.C5.40.v1.A.nonSL5-1
TAGTCGCTCTTCGCTTTGGGTTATCGGCTTGTTTACTACTTTGGGAGTATGAAACTATTA
CGTTTATTCAGAAATTTCTGGACCTTTCCGGACCAAATCCAAATTTCCACCATTGCCTTC
CATGGCTTGATTCTAACCACGGGAGAAAGCGAGAAATAGATTTGCCGCCATTTTCTTTGG
GAGTCTCTCGATTCCAGTCTCAATCCCTAACTAGCCATGCCTGGTCTGTCCTCCTACCTA
ACTCCACTGCGTCCTTATGGCTCTCCTGGTCCATGGTTGCCACTGGCTGTGGTTTCCCGC
ACATTGTACCGGATCCTACACGACTTAACATCTGTTTTTTACCAAGGCATTTTCCCAAAC
TAATCATAATCTGTTCAAGAGAAATGTAATTGGTAAGGTAAACTTGATTTTTTCAATGTA
AAAATTAGTTTTTTTTCCGTATTAGAATAAGTAACTCATAGAATTAAAGAAATTGGTATA
ACCTACAACCAAACTAACTTAACATTAACTGTACTTTTCTTTATGATTTTGACATTTGAT
TTTCATTTAAAGTCCAATAAGAAAAGTATGGCAGGTAGTCGTGTATTTATCGGACGTTTA
AGCAACCGTGCCACTGAATCCGATGTGGAGAGATTCTTCAAAGGGTTCGGTCGAATTCGG
GAAGTCAAGCTGAAGACTGGATATGGTTTCGTCGAGTTTGAAGAAAACCGTGACGCAGAG
GATGCTGTGTACGAGATGAACAACCAGTCTCTGTGTGGAGAGCGTGTCACTGTGGAGCAC
GCAAAAGGTACTCCAAGAAGAGGAGGAGATTTCCGAGGAGGTGGATCATACGGTCGTGGT
GGAGGCGGTGGAGGAGGAAATTATCGGGGATACGATAATAACTACGGAGGAAGAAACGGG
GGAGGTTTTAGAGGAGGAAGGGATGATCGTTTTGGGGGCGGGAGAGGTTCTGGGAGATTT
GGTCCTCCCTCTCGCACCAAGTATCGGGTGATTGTGGAGAACTTATCTTCAAGAGTGAGC
TGGCAGGATTTGAAAGATTATCTTCGTCAAGCTGGGGATGTTTCCTTTGCTGAAGCTCAT
CAGTCCGTACAAAACGAAGGAATTGTTGATTTTGCAACTTACGATGACATGAAGGCTGCG
ATTGAGAAACTGGACGACACAGAGCTTAGTGGCAGGAAGATCAGATTGATCGAGGATAAA
CCTGCATCCAGGAGCAGAAGTCGGAGCAGGAGTCGAAGCAGAAGCAGATCCAGGAGTCCC
AGAAGATCTCGTTCCCGATCCCCATACGCAGGCCGATACAACCGTCGCAGTCGTTCAGAT
TCAAGGTCACCTTCCCGATCACCCAATAATAATTGAACATGACAAATAAAAGAAAAGTTG
TGACTCAGTATGCAACTGCCTATTTTACAAAATGGCATTGCTACTTTTTACATCGTGTAT
TGGTTGTAAAGTAAATTTTGACAAATTATTCCTGCCATAAAACATCCAATGTTTTAGTTT
TGAGATCCATATCTTAATCAGACACATTTTCCTGCGTCTCCAAATGTTAAAAAAAACTGT
TGAATGATTTACAAATATGTATGTGCTTTTGTTTTGACATGTATTTTCTTTGGTTTTACA
ATTTCAAATTCTTATGTTGGCGATAGTTGATAACTGCTTATGCGGATGTAAAATCTTATT
TTATTAAGGTGTTATCGTATACATACAACTTTAGTTCTCAGTGTGCATTGCATTGACAAT
AAAAATATTTCAAACTAGAAACTTCTCACATCTGTAAATATAAACGTACCAGCTAAGTTA
ACTGTAACCAGTAATTGATGTTTGGTTTAAATTGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[32-120] 3.1E-22 - T[177-250] 1.9E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[43-113] 16.995 - T[178-251] 11.656 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[43-123] 1.7E-32 - T[175-246] 1.7E-32 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[44-113] 6.02186E-37 |
| SMART |
RRM_dom (IPR000504) - T[44-109] 2.5E-18 - T[179-247] 9.0E-10 |
| Pfam |
RRM_dom (IPR000504) - T[45-106] 7.9E-16 - T[180-245] 9.4E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 57.895 % | 234 | 1.22E-73 |
| SRSF6_HUMAN | 53.589 % | 209 | 6.65E-66 |
| SRSF5_HUMAN | 52.153 % | 197 | 3.18E-62 |