- Transcript 'KH2012:KH.C5.25.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.L154.40.v1...' >
- Transcript 'KH2012:KH.C5.25.v1.A...' >
- Transcript 'KH2012:KH.C5.40.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.40.v1.A.ND1-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC5 [3,354,086 / 3,356,162]
Amino acid sequence
Length: 301
>KH.C5.40.v1.A.ND1-1
VTHRIKEIGITYNQTNLTLTVLFFMILTFDFHLKSNKKSMAGSRVFIGRLSNRATESDVE
RFFKGFGRIREVKLKTGYGFVEFEENRDAEDAVYEMNNQSLCGERVTVEHAKGTPRRGGD
FRGGGSYGRGGGGGGGNYRGYDNNYGGRNGGGFRGGRDDRFGGGRGSGRFGPPSRTKYRV
IVENLSSRVSWQDLKDYLRQAGDVSFAEAHQSVQNEGIVDFATYDDMKAAIEKLDDTELS
GRKIRLIEDKPASRSRSRSRSRSRSRSRSPRRSRSRSPYAGRYNRRSRSDSRSPSRSPNN
N
Nucleotide sequence
Length: 1,852
>KH2012:KH.C5.40.v1.A.ND1-1
TTGCCAGCGAAATTTTAGTCGCTCTTCGCTTTGGGTTATCGGCTTGTTTACTACTTTGGG
AGTATGAAACTATTACGTTTATTCAGAAATTTCTGGACCTTTCCGGACCAAATCCAAATT
TCCACCATTGCCTTCCATGGCTTGATTCTAACCACGGGAGAAAGCGAGAAATAGATTTGC
CGCCATTTTCTTTGGGAGTCTCTCGATTCCAGTCTCAATCCCTAACTAGCCATGCCTGGT
CTGTCCTCCTACCTAACTCCACTGCGTCCTTATGGCTCTCCTGGTCCATGGTTGCCACTG
GCTGTGGTTTCCCGCACATTGTACCGGATCCTACACGACTTAACATCTGTTTTTTACCAA
GGCATTTTCCCAAACTAATCATAATCTGTTCAAGAGAAATGTAATTGGTAAGGTAAACTT
GATTTTTTCAATGTAAAAATTAGTTTTTTTTCCGTATTAGAATAAGTAACTCATAGAATT
AAAGAAATTGGTATAACCTACAACCAAACTAACTTAACATTAACTGTACTTTTCTTTATG
ATTTTGACATTTGATTTTCATTTAAAGTCCAATAAGAAAAGTATGGCAGGTAGTCGTGTA
TTTATCGGACGTTTAAGCAACCGTGCCACTGAATCCGATGTGGAGAGATTCTTCAAAGGG
TTCGGTCGAATTCGGGAAGTCAAGCTGAAGACTGGATATGGTTTCGTCGAGTTTGAAGAA
AACCGTGACGCAGAGGATGCTGTGTACGAGATGAACAACCAGTCTCTGTGTGGAGAGCGT
GTCACTGTGGAGCACGCAAAAGGTACTCCAAGAAGAGGAGGAGATTTCCGAGGAGGTGGA
TCATACGGTCGTGGTGGAGGCGGTGGAGGAGGAAATTATCGGGGATACGATAATAACTAC
GGAGGAAGAAACGGGGGAGGTTTTAGAGGAGGAAGGGATGATCGTTTTGGGGGCGGGAGA
GGTTCTGGGAGATTTGGTCCTCCCTCTCGCACCAAGTATCGGGTGATTGTGGAGAACTTA
TCTTCAAGAGTGAGCTGGCAGGATTTGAAAGATTATCTTCGTCAAGCTGGGGATGTTTCC
TTTGCTGAAGCTCATCAGTCCGTACAAAACGAAGGAATTGTTGATTTTGCAACTTACGAT
GACATGAAGGCTGCGATTGAGAAACTGGACGACACAGAGCTTAGTGGCAGGAAGATCAGA
TTGATCGAGGATAAACCTGCATCCAGGAGCAGAAGTCGGAGCAGGAGTCGAAGCAGAAGC
AGATCCAGGAGTCCCAGAAGATCTCGTTCCCGATCCCCATACGCAGGCCGATACAACCGT
CGCAGTCGTTCAGATTCAAGGTCACCTTCCCGATCACCCAATAATAATTGAACATGACAA
ATAAAAGAAAAGTTGTGACTCAGTATGCAACTGCCTATTTTACAAAATGGCATTGCTACT
TTTTACATCGTGTATTGGTTGTAAAGTAAATTTTGACAAATTATTCCTGCCATAAAACAT
CCAATGTTTTAGTTTTGAGATCCATATCTTAATCAGACACATTTTCCTGCGTCTCCAAAT
GTTAAAAAAAACTGTTGAATGATTTACAAATATGTATGTGCTTTTGTTTTGACATGTATT
TTCTTTGGTTTTACAATTTCAAATTCTTATGTTGGCGATAGTTGATAACTGCTTATGCGG
ATGTAAAATCTTATTTTATTAAGGTGTTATCGTATACATACAACTTTAGTTCTCAGTGTG
CATTGCATTGACAATAAAAATATTTCAAACTAGAAACTTCTCACATCTGTAAATATAAAC
GTACCAGCTAAGTTAACTGTAACCAGTAATTGATGTTTGGTTTAAATTGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[32-120] 3.1E-22 - T[177-250] 1.9E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[43-113] 16.995 - T[178-251] 11.656 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[43-123] 1.7E-32 - T[175-246] 1.7E-32 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[44-113] 6.02186E-37 |
| SMART |
RRM_dom (IPR000504) - T[44-109] 2.5E-18 - T[179-247] 9.0E-10 |
| Pfam |
RRM_dom (IPR000504) - T[45-106] 7.9E-16 - T[180-245] 9.4E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 57.895 % | 234 | 1.22E-73 |
| SRSF6_HUMAN | 53.589 % | 209 | 6.65E-66 |
| SRSF5_HUMAN | 52.153 % | 197 | 3.18E-62 |