- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C5.175.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.175.v1.A.SL1-1
Possible name(s)
DDX10; DDX18; DDX31
Gene model
Location
KhC5 [3,148,804 / 3,152,667]
Amino acid sequence
Length: 730
>KH.C5.175.v1.A.SL1-1
LKMAENLTLNIFSDGDPQPAMGKLRYLNRAPKDRKKRILQRRKLKKKLIKIKQLKSEETA
KNLEKTTLNDSVDGKQSENSTKIDTTKVNSKVDVKVNNGYKLKPTKQGKIRSSLFSANPE
IPALNLPVVNDAPKKTIISAPVTSFSHLNLHLGIESYISEKLEFTDMTEVQSKSLPVLLD
GKDALIRSQTGSGKTIAYALAVVQNLQGLVPRITRMDGPAALVFVPTRELALQSYEVFSR
LTLPVRRIVATCVVGGQKRKSEKARLRKGSNIIVSTPGRFIDHIENTHCLSLAKVKWIIF
DEADRLLDMGFQKDINKILTAVKEQTGTKQQVVLLSATLTKGVENLVNLALTNPVHIETE
AGKAKEKNAQIFVDPLTGLNVEKVPLPSKLTQSVTIVPSKLRLVTLVAFINKKCVIEGDG
KLLVFLSCRDSVEFHFRLLKNMKGVLNNAISDKKLGFFQLHGGMTQPERNSTINGYRCAK
SGVLLCTDVASRGLDIPKVDWVVQHTSPGNPVDYVHRVGRTARAGKAGHALLILSPAEVE
YVKLLTKFDIVAKELKLEEILFGLLEKKQQSINYKIRIQLGKEEASKVHRELEELVHGDK
SLKEFAGKAFVAYVRSYATYPAALKHIFHVQNLHLGHVAKSFALQEAPSEFLHNLKKTVG
AHAIRQIRRKKSNMENSETENNKTDDITVEKEIKKKGTKRHPIVAKFDLMSEFSSGITDF
SPSAKKKKVK
Nucleotide sequence
Length: 2,884
>KH2012:KH.C5.175.v1.A.SL1-1
AGTTAAAAATGGCAGAAAATCTGACACTGAATATCTTTTCTGATGGAGACCCACAGCCTG
CTATGGGAAAACTCCGTTATTTAAATCGAGCCCCAAAAGACAGAAAGAAGAGAATTTTGC
AAAGAAGAAAACTGAAAAAGAAATTGATCAAAATTAAACAATTGAAAAGTGAAGAAACTG
CTAAGAATTTGGAGAAAACTACTTTAAATGACAGTGTTGATGGAAAACAGTCTGAAAACT
CCACTAAAATAGACACAACAAAAGTTAACAGTAAAGTTGATGTAAAAGTCAACAATGGAT
ACAAGTTAAAACCTACAAAACAAGGAAAAATTCGAAGTTCTTTGTTTTCTGCAAATCCAG
AAATTCCAGCTCTAAATTTACCTGTTGTAAATGATGCTCCTAAAAAAACGATCATTTCTG
CACCTGTCACTTCTTTTTCCCATCTAAATCTACATCTAGGAATCGAAAGTTACATCTCAG
AAAAGTTAGAGTTCACTGACATGACAGAAGTGCAATCGAAATCCTTACCTGTGCTTTTGG
ATGGTAAAGATGCATTGATTCGTTCCCAAACTGGCTCAGGGAAAACCATTGCGTATGCTC
TTGCAGTGGTTCAAAATCTGCAAGGGCTGGTGCCCAGGATCACAAGAATGGATGGGCCAG
CTGCACTTGTGTTTGTGCCAACACGGGAGCTTGCCCTTCAAAGTTATGAGGTCTTCAGTC
GCCTTACACTTCCAGTGAGAAGAATTGTAGCCACTTGTGTAGTGGGAGGGCAGAAACGGA
AATCAGAAAAGGCGAGATTAAGAAAAGGGTCAAATATTATCGTTTCCACACCGGGCAGAT
TTATTGACCATATTGAAAATACTCACTGCTTATCTTTGGCAAAAGTGAAATGGATAATCT
TTGATGAGGCTGACAGATTGTTAGATATGGGATTTCAAAAGGACATTAATAAGATTTTAA
CTGCAGTCAAAGAGCAAACTGGAACCAAACAACAAGTAGTCTTGCTATCTGCAACCCTAA
CAAAAGGCGTCGAAAATCTTGTCAATTTAGCGCTGACCAATCCAGTACACATTGAAACTG
AGGCTGGAAAAGCAAAAGAAAAAAATGCACAGATTTTTGTTGATCCTTTGACTGGTTTAA
ATGTGGAAAAAGTGCCTTTACCAAGCAAGTTAACCCAGTCTGTTACAATAGTACCAAGCA
AACTGCGTCTTGTTACACTAGTTGCATTTATCAACAAGAAATGCGTTATAGAGGGTGATG
GGAAACTACTTGTCTTCCTATCTTGTCGAGATTCCGTGGAATTTCACTTTAGGTTGTTGA
AAAACATGAAAGGGGTCTTAAATAATGCAATAAGTGATAAAAAACTAGGATTCTTTCAGC
TTCATGGCGGCATGACACAGCCTGAAAGGAACAGCACCATTAACGGATACAGATGCGCAA
AGTCGGGTGTTCTTCTATGTACAGATGTGGCTTCTAGGGGTTTGGATATTCCAAAGGTGG
ATTGGGTGGTGCAACATACAAGTCCTGGAAATCCCGTAGATTACGTACATAGGGTTGGGA
GAACTGCTCGTGCTGGCAAAGCTGGGCATGCCTTGCTTATCCTGAGCCCAGCAGAAGTTG
AATATGTGAAACTACTGACAAAGTTTGACATTGTAGCAAAGGAGTTAAAGCTTGAAGAAA
TTCTGTTTGGTTTGCTAGAAAAGAAACAACAAAGTATTAATTATAAAATAAGAATCCAAC
TTGGAAAAGAAGAAGCATCAAAAGTTCATCGTGAGCTTGAAGAGTTGGTTCACGGTGATA
AAAGTTTGAAGGAATTTGCAGGAAAAGCTTTTGTGGCATATGTGCGCTCGTATGCCACCT
ACCCAGCTGCTCTTAAGCACATATTTCATGTGCAGAATTTACATTTAGGTCATGTAGCTA
AAAGCTTTGCACTCCAGGAAGCACCGTCCGAGTTTCTACACAATTTGAAAAAGACAGTTG
GGGCACATGCAATCCGTCAAATTAGGAGAAAAAAATCGAACATGGAAAATTCTGAAACTG
AAAACAACAAAACGGATGATATAACTGTAGAGAAAGAAATTAAGAAGAAGGGCACAAAAC
GTCATCCAATTGTCGCTAAGTTTGACTTAATGTCAGAATTCAGCAGTGGTATCACTGACT
TCAGTCCTTCTGCTAAGAAGAAAAAAGTCAAATAATCTGCGGGGTGTTTGTGAATAAAAT
ACCTTAAACTAGAAATTGCCTTTCTGGTAAAAACGTAAATTTTATTGTACCAACGTTATG
CTCGCTATCTGGCGAGACGTCATCAGAGTATAAAATTCTTTTTACGGTAAAGTTTATTTT
TATGACAAATCAAATGTGCAGCGTTTACACAGTTAACTTAAAAAAACAGTGAGAATACAT
CAACATTATAGTAACAGTGAGACATAACAGTGGCCTATTTAGTATTATCACTTTTTTACT
TTTAACAGCCAGTGTTAAAAATAATCAAGTGGACAGATGTAGCATCAGGAATATAAAGCA
TGAGCATCCTGGAAATATTTAATATATGAACATGGTACCGTACATGAAAATCTATGCTCC
ATTGGGTAGGTACTTTGTATTACAATATGATACTGAGAAAATGGATGGATTTTAGTAATT
TACATTTTTTATATGAACTTAAATATAACGAATTTATATCTTATGTCATGGCATGCACAT
TTGCAACCACCATATTATATTTGTAGGTTCAATACATAATATGATTTCAATCAGAGTTCG
AATCACTGCTGACTCCATCCATCATAAAACTTTCCATTTGTTGAAAATCTCGCTCAAGTT
TTCCACCTTCCTCTTGTTGCCATGGAGAGGCAGAGAGAGCAGCTCCCAAGCTGCAGAAGA
GAAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[143-172] 7.906 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[163-372] 9.9E-48 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[168-346] 7.2E-46 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[175-357] 30.717 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[217-355] 8.74E-62 - T[387-545] 8.74E-62 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[299-307] . |
| CDD |
Helicase_C (IPR001650) - T[389-533] 3.90436E-26 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[402-568] 18.954 |
| Pfam |
Helicase_C (IPR001650) - T[416-525] 7.2E-21 |
| SMART |
Helicase_C (IPR001650) - T[440-525] 2.5E-24 |
| SMART |
DUF4217 (IPR025313) - T[587-652] 1.0E-26 |
| Pfam |
DUF4217 (IPR025313) - T[589-649] 4.8E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX10_HUMAN | 32.63 % | 233 | 1.4E-65 |
| DDX18_HUMAN | 35.366 % | 276 | 5.32E-83 |
| DDX31_HUMAN | 44.019 % | 503 | 1.11E-167 |