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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...' > 
  2. Transcript 'KH2012:KH.C2.28.v2.A...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S8...' > 
  5. Transcript 'KH2012:KH.C4.420.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL3-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,240]

Sequences

Amino acid sequence

Length: 81

>KH.C4.420.v1.A.nonSL3-1
SRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGSVE
KIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 677

>KH2012:KH.C4.420.v1.A.nonSL3-1
TATCCAGACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACA
AGAAGTTGGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTG
ATCCGTTCATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTG
AAAAGATCGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACC
GGATATAGTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTAT
TCAAACATAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACA
TTTTGGAACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTCACTACT
CCCAATTAAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATT
ATCATTGACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGT
TTTGCCGTTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAA
TGGCCAAAAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGT
CACTTTAATTTAATTAG

InterProScan

CDD
Sm_G (IPR034098) - T[10-79] 2.45432E-37
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[12-79] 7.77E-18
SMART
LSM_dom_euk/arc (IPR001163) - T[12-77] 3.9E-20
Pfam
LSM_dom_euk/arc (IPR001163) - T[13-76] 2.8E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUXG_HUMAN 71.053 % 117 1.15E-36
RUXGL_HUMAN 67.105 % 112 1.64E-34