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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C4.420.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL28-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,263]

Sequences

Amino acid sequence

Length: 89

>KH.C4.420.v1.A.nonSL28-1
VFVIYNFVSRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIG
KRKDGSVEKIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 700

>KH2012:KH.C4.420.v1.A.nonSL28-1
AGTGTTTGTGATCTACAACTTTGTATCCAGACTAATCGAAATGAGCAAGGCGCACCCTCC
TGAGCTTAAAAAGTTTATGGACAAGAAGTTGGATTTAAAATTAAATGGCGGACGAAGCAT
TCAGGGAATTCTACGAGGATTTGATCCGTTCATGAACTTAGTTATTGACGATGGTATAGG
CAAAAGAAAGGACGGTTCAGTTGAAAAGATCGGTATGGTTGTCGTGCGCGGAAACTCTGT
ATTAATGATGGAGGCTGTGGACCGGATATAGTCGAATAATCAAAGGCTTATCCGTGGTAA
ACAATCATTAAGAGTTCTGTTATTCAAACATAAGAATTCAATTAATATAGAAAGCGACAT
TATTATTCATCGTAGTGTCAACATTTTGGAACTTCTTTGTTATGTTCAATATACATTTTC
TAATTTGATTTCAATTCACTACTCCCAATTAAATCATACATGTTTTTGTTGAATGTGTCT
CTGTTTTCTATGGTCACTTTATTATCATTGACAAATACAACTTTTATATTTGACCTACCT
GTCTCGCTGTCTGAATGTTGTGTTTTGCCGTTGTGTCTTACATGTTAAGCTGGAAGTAAC
AAATTTAACTCAAAATTGAAGAATGGCCAAAAGTAACTACAGATCTTAGGTTTTTTTTTG
AATGTCTTTTCGAGAAAATTAGTCACTTTAATTTAATTAG

InterProScan

CDD
Sm_G (IPR034098) - T[18-87] 3.74849E-37
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[20-87] 1.06E-17
SMART
LSM_dom_euk/arc (IPR001163) - T[20-85] 3.9E-20
Pfam
LSM_dom_euk/arc (IPR001163) - T[21-84] 3.9E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUXG_HUMAN 71.053 % 117 1.68E-36
RUXGL_HUMAN 67.105 % 112 2.55E-34