Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL24-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,230]

Sequences

Amino acid sequence

Length: 78

>KH.C4.420.v1.A.nonSL24-1
IEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGSVEKIG
MVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 667

>KH2012:KH.C4.420.v1.A.nonSL24-1
AATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACAAGAAGTTGGA
TTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTGATCCGTTCAT
GAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTGAAAAGATCGG
TATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACCGGATATAGTC
GAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTATTCAAACATAA
GAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACATTTTGGAACT
TCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTCACTACTCCCAATTAAA
TCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATTATCATTGACA
AATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGTTTTGCCGTTG
TGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAATGGCCAAAAG
TAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGTCACTTTAATT
TAATTAG

InterProScan

CDD	Sm_G (IPR034098) - T[7-76] 3.63537E-37
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[9-76] 6.75E-18
SMART	LSM_dom_euk/arc (IPR001163) - T[9-74] 3.9E-20
Pfam	LSM_dom_euk/arc (IPR001163) - T[10-73] 2.5E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RUXG_HUMAN	71.053 %	117	1.12E-36
RUXGL_HUMAN	67.105 %	112	1.71E-34