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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C4.420.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL16-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,246]

Sequences

Amino acid sequence

Length: 83

>KH.C4.420.v1.A.nonSL16-1
FVSRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGS
VEKIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 683

>KH2012:KH.C4.420.v1.A.nonSL16-1
ACTTTGTATCCAGACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTA
TGGACAAGAAGTTGGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAG
GATTTGATCCGTTCATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTT
CAGTTGAAAAGATCGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTG
TGGACCGGATATAGTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTC
TGTTATTCAAACATAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTG
TCAACATTTTGGAACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTC
ACTACTCCCAATTAAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCAC
TTTATTATCATTGACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATG
TTGTGTTTTGCCGTTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATT
GAAGAATGGCCAAAAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAA
ATTAGTCACTTTAATTTAATTAG

InterProScan

CDD
Sm_G (IPR034098) - T[12-81] 2.23424E-37
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[14-81] 8.39E-18
SMART
LSM_dom_euk/arc (IPR001163) - T[14-79] 3.9E-20
Pfam
LSM_dom_euk/arc (IPR001163) - T[15-78] 3.1E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUXG_HUMAN 71.053 % 117 1.36E-36
RUXGL_HUMAN 67.105 % 112 2.14E-34