- Transcript 'KH2012:KH.C4.250.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.250.v1.R.ND1-1
Possible name(s)
DDX24; DDX47
Gene model
Location
KhC4 [3,272,636 / 3,279,638]
Amino acid sequence
Length: 690
>KH.C4.250.v1.R.ND1-1
VGAFDNEPIKPITNLPKKKKNLRKQERLNKLKSLKEPEKVVVDKTTTELPENTTDQNNKD
VIEKITTVNNNENNVKAKKRKNKTKPNKKSKKAKLNSGTQIEETNEEENEDILSTVDMSA
WQNLYVPETVLKALAELRFTKPMPIQEQCIPVAIRDKRDILGAAETGSGKTLAFGIPLLH
HLMEDRERNLLENTENAEIDEVDLCFSAYCWFSLFYDDEHMSDFEDAEPVSKEEIEETQP
TKALPALVLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLNKEPDIVIAT
PGRLWELLESGHPYLSTIHKLRYLVIDEADRMLEHGHFEELNKLLEVINLKKSKTKRQTF
IFSATLTTVHFTPNRPNFPTQASSNTKDTKLSKLMKKIGVRNKPFVADLTTKKLTAEKLS
EAKIICQPKEKDFYLYYFIKSHPGRTLIFTNSIDCIFHLSGVLDALGCNPLHIHAKMQQR
QRLKHLDRFQENPNAIMIASDVAARGLDIPGVKYVIHYQVPRTMETYIHRSGRSARSGED
GLSLLFVSSDEMSFYKRICRSLDKEDGLPLFLINDSYMAAIRKMVTLAREVDSLSHREKK
VRLHNDWFSKAAAAMDMDIDDDMLLSTDNRSDKTQLLKSKRQQLSALLKRPIFPKGFSGK
FITKSGELRLPGILNGKSQNVFGKSMTGKK
Nucleotide sequence
Length: 2,301
>KH2012:KH.C4.250.v1.R.ND1-1
GTTGGAGCTTTTGACAATGAACCAATAAAACCAATCACAAATTTACCCAAGAAAAAAAAG
AATTTAAGAAAACAGGAAAGATTAAACAAACTCAAATCATTAAAAGAACCTGAAAAGGTA
GTTGTTGATAAAACAACAACCGAACTGCCTGAAAACACTACAGATCAAAATAATAAAGAT
GTTATTGAAAAAATTACAACTGTAAACAATAACGAAAACAATGTAAAAGCGAAAAAGAGG
AAAAACAAAACTAAACCGAACAAAAAATCCAAAAAAGCAAAATTAAATTCTGGAACTCAA
ATAGAAGAAACCAATGAAGAAGAAAATGAAGACATTTTATCCACAGTTGACATGAGTGCT
TGGCAAAATCTTTATGTTCCAGAAACTGTTTTAAAGGCATTAGCAGAGCTTAGGTTTACA
AAACCTATGCCAATACAAGAACAGTGTATACCTGTTGCCATCCGTGACAAACGAGACATC
TTAGGAGCTGCAGAGACAGGAAGTGGGAAGACGTTGGCATTCGGGATTCCTCTCCTGCAT
CACTTGATGGAAGATAGGGAGAGAAATTTATTGGAAAACACGGAAAATGCGGAAATTGAT
GAGGTAGATTTGTGTTTTTCTGCATATTGTTGGTTTTCTTTGTTTTATGATGATGAACAC
ATGAGTGACTTTGAAGACGCTGAACCAGTTTCAAAAGAAGAAATTGAAGAAACGCAACCG
ACCAAAGCATTACCAGCACTTGTGTTAACACCAACGAGAGAATTAGCCATACAGGTAAAG
AAGCACTTGACACAAGTTGCCAAACACACTAAACTATGGTCAACTGTGGTGGTTGGTGGA
ATGGCTCAACAAAAACAAATCCGGTTGTTAAACAAGGAACCAGATATTGTCATTGCAACT
CCTGGAAGGTTGTGGGAATTGTTAGAATCGGGTCACCCATACTTATCCACCATCCACAAA
CTTCGATATCTTGTGATCGATGAAGCGGATCGTATGCTCGAACACGGACATTTTGAAGAA
CTCAACAAACTACTTGAAGTTATTAATCTAAAAAAATCTAAAACGAAACGTCAAACCTTC
ATATTCTCTGCCACTCTTACCACTGTACATTTTACTCCAAACCGACCAAACTTTCCAACT
CAAGCATCATCTAACACCAAGGATACCAAACTATCAAAGCTAATGAAGAAGATAGGGGTT
CGGAACAAACCGTTTGTTGCGGACTTGACTACTAAAAAACTTACAGCTGAGAAATTATCT
GAAGCAAAAATAATTTGCCAACCAAAAGAAAAGGATTTTTATCTTTACTATTTCATTAAA
TCACATCCTGGTCGTACTTTGATCTTCACGAACAGCATCGATTGCATCTTCCACCTCTCG
GGAGTCCTTGATGCTCTCGGATGCAATCCTCTTCACATCCACGCAAAGATGCAACAGCGA
CAAAGATTAAAACATCTCGATCGTTTCCAGGAAAATCCGAATGCGATCATGATCGCAAGT
GATGTGGCTGCAAGAGGACTTGACATACCTGGTGTAAAATATGTGATTCACTACCAAGTA
CCTCGTACCATGGAAACTTATATACATAGAAGTGGAAGGTCAGCCAGATCTGGTGAGGAT
GGTTTAAGTTTGCTTTTCGTTAGTTCGGATGAAATGAGCTTCTACAAACGCATCTGTAGA
TCCCTGGATAAAGAGGATGGTCTCCCTCTCTTCCTCATCAATGATAGTTACATGGCTGCT
ATAAGGAAGATGGTGACCTTGGCAAGGGAAGTGGATTCGCTTTCACATAGGGAGAAAAAG
GTTCGTTTGCATAACGACTGGTTCAGCAAAGCTGCCGCAGCCATGGATATGGATATAGAT
GACGACATGCTGCTTTCAACGGATAACAGGAGTGACAAAACCCAGCTGTTGAAATCGAAA
AGGCAACAGCTTAGCGCTTTGCTGAAACGACCGATTTTTCCCAAAGGTTTTTCAGGAAAA
TTCATCACGAAAAGCGGGGAGCTGCGGTTGCCAGGGATTCTTAATGGGAAATCCCAGAAC
GTGTTTGGAAAATCGATGACTGGGAAAAAATAAACGAAATTTTCTTTTCGTACATATCTT
GTCGTATAGCCACTCGTCGTCTGCTGCTATTTTAGCAAGAATCTTGACAAAAAAGCCTTT
GTTTTAACTCAAGGTTTTGATAAGCTGTTTTGGCGGTTGTGTTAAATAGAGAAGAGATTT
TTGGTGCTTTTGAGGATCGACGAATTTAGGCGTCTCGTCCACTTGCAAATTAAGGAACTC
GAATAAACAAACCGTTTTTGA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[119-147] 9.913 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[136-185] 1.49E-5 - T[244-366] 3.16E-60 - T[417-558] 3.16E-60 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[138-392] 4.9E-43 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[144-367] 1.3E-41 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[151-384] 25.178 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[325-333] . |
| CDD |
Helicase_C (IPR001650) - T[428-546] 2.01985E-28 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[431-585] 18.436 |
| Pfam |
Helicase_C (IPR001650) - T[431-538] 7.6E-25 |
| SMART |
Helicase_C (IPR001650) - T[457-538] 6.0E-25 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX47_HUMAN | 34.332 % | 191 | 9.78E-54 |
| DDX49_HUMAN | 30.522 % | 195 | 4.06E-55 |
| DDX24_HUMAN | 46.868 % | 421 | 2.63E-136 |
