Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.19.v1.A.SL4-1

Possible name(s)

TRMT12; TRMT5

Gene model

KH2012:KH.C4.19

Location

KhC4 [2,606,073 / 2,611,243]

Sequences

Amino acid sequence

Length: 463

>KH.C4.19.v1.A.SL4-1
SQCKRVVMVIAYIRNLIRKVIQRGMDHEHSALYPPAAVRGMKVLDRSAFEQEVTLPALLV
PVQSLRNCRKMMKSKLVNLSINKKVVDPPAHLVGEELTAGHKLFLLKPGTTMETYSSDEK
QMLGKLGVKDKIYDYRITLGYENYKHWDVLRAILPDSEMAARGFSQVGHILHVNLRDHQL
PYKHIIGQVLLDKIQTARTVVNKHQNIDNKFRNFEMEVIAGENNFVTRIIEHGRKFEFDF
SKVFWNSRLSTEHQRITNFVSESDVVFDVFAGVGPFAIPIAKKGCVVYANDLNPESYRWL
LHNVALNKTKAKCFNSDGREFIQTELRNYLLTRSPHKVHVLMNLPAIAVEFLDVFRGLLC
NGDCLAANDLSNASHKKLLSIPEVCVHLYIFAPEKDGIADLKSRIKQSLGCALPEDAVIY
NVRNVAPKKQMYCVSFVLSQHWMDQKEQDVYEPAPKKIKECIS

Nucleotide sequence

Length: 1,549

>KH2012:KH.C4.19.v1.A.SL4-1
ACTGCTGAAGAATGAACGCTGTATCACATGTGGCTAAAATGTATTCACACCCCAACTGAT
AGTCTCAATGTAAACGTGTTGTGATGGTCATTGCCTACATTAGAAATTTAATACGTAAAG
TCATACAAAGAGGAATGGATCACGAACATAGCGCTCTGTACCCGCCTGCTGCAGTGCGTG
GCATGAAAGTGTTGGATAGGAGCGCATTTGAACAAGAAGTCACCCTTCCAGCATTACTTG
TGCCTGTACAATCTCTAAGGAACTGCCGTAAAATGATGAAAAGCAAACTTGTTAATTTAA
GTATCAACAAAAAAGTGGTTGACCCCCCTGCACACCTGGTGGGTGAAGAACTAACTGCTG
GCCACAAACTATTTCTGTTGAAACCAGGCACCACAATGGAGACTTATTCATCGGACGAAA
AACAAATGTTAGGCAAACTTGGAGTAAAAGATAAAATATATGACTACAGGATAACATTGG
GTTATGAAAACTATAAGCACTGGGACGTACTGCGAGCCATTCTACCTGACAGTGAAATGG
CAGCAAGAGGATTTTCTCAAGTTGGTCACATTCTGCATGTAAATCTAAGGGATCATCAGT
TACCTTACAAACACATAATTGGCCAGGTTCTTCTGGACAAGATACAGACAGCGCGCACTG
TGGTAAACAAGCACCAAAATATTGATAACAAGTTTCGAAATTTTGAAATGGAGGTGATAG
CTGGGGAAAACAATTTTGTTACAAGGATTATAGAACATGGAAGGAAATTCGAATTTGATT
TTTCTAAGGTGTTTTGGAATTCACGTTTATCTACAGAACACCAGCGTATAACCAATTTTG
TGTCTGAAAGTGATGTTGTATTTGACGTTTTTGCTGGAGTTGGACCTTTTGCCATTCCAA
TCGCTAAGAAGGGTTGTGTAGTTTACGCAAATGATTTGAATCCTGAGTCATATAGATGGT
TGCTCCACAATGTTGCATTGAACAAAACCAAAGCCAAATGTTTTAACTCTGACGGAAGGG
AATTTATACAAACTGAATTGCGAAATTATCTTCTTACTAGAAGTCCACACAAAGTTCATG
TTTTAATGAACCTGCCTGCCATTGCTGTAGAATTTCTTGATGTTTTTCGTGGCTTGCTTT
GCAATGGTGATTGCCTTGCTGCTAATGATCTGTCCAATGCTTCACACAAGAAACTGCTTT
CTATTCCAGAAGTATGTGTTCATTTGTACATATTCGCGCCAGAAAAAGATGGAATAGCTG
ACTTAAAATCAAGAATTAAGCAAAGTCTTGGCTGTGCACTGCCAGAGGACGCTGTTATAT
ATAATGTTCGAAATGTTGCCCCAAAGAAACAAATGTACTGTGTCAGTTTTGTATTAAGTC
AGCATTGGATGGACCAGAAAGAGCAAGATGTATATGAACCTGCACCAAAAAAAATAAAAG
AATGCATTAGCTGATGTTAAAACTTGTGCTTTGCAATTGGTCTATTGCAGAATTGTTTAG
TTTCTTTGCAATAAATATTTTACAATCATCTAGTGTGTGATTTTGCCAG

InterProScan

Hamap	tRNA_Gua_MeTrfase_euk (IPR025792) - T[41-456] 24.916
SUPERFAMILY	SAM-dependent_MTases (IPR029063) - T[162-439] 6.48E-55
Pfam	MeTrfase_TRM5/TYW2 (IPR030382) - T[163-355] 2.2E-61
ProSiteProfiles	MeTrfase_TRM5/TYW2 (IPR030382) - T[164-440] 96.843

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRM5_HUMAN	43.75 %	337	4.37E-111